Commits · 8f66c1590fe1d38924afb792f294e278c5507b83 · mbb / waw

21 Jun, 2022 2 commits
- vcf output from populations can be insorted so bcftools sort before tabix · 8f66c159
  khalid authored Jun 21, 2022
  
  8f66c159
- rm_pcr_duplicates is disabled by default · a3add658
  khalid authored Jun 21, 2022
  
  a3add658
20 Jun, 2022 1 commit
- Add missing bracket to param name · 90cbcc7b
  khalid authored Jun 20, 2022
  
  90cbcc7b
17 Jun, 2022 3 commits
- Update stacks denovo pipeline · 427b1513
  khalid authored Jun 17, 2022
  
  427b1513
- refactor shell command · 367f8499
  khalid authored Jun 17, 2022
  
  367f8499
- no more use of bcftools sort on vcf produced by populations · 8e81b4e6
  khalid authored Jun 17, 2022
  
  8e81b4e6
16 Jun, 2022 4 commits
- Up todate Interop WF · 234d1dd1
  khalid authored Jun 16, 2022
  
  234d1dd1
- Deal with cases where Index2 is absent · c483d8fc
  khalid authored Jun 16, 2022
  
  c483d8fc
- Add an up todate version · 83cefbad
  khalid authored Jun 16, 2022
  
  83cefbad
- change labels · 4f80d775
  khalid authored Jun 16, 2022
  
  4f80d775
10 Jun, 2022 2 commits
- upgade to stacks 2.61 which allow mulithreading for process_radtags · 1d93b098
  khalid authored Jun 10, 2022
  
  1d93b098
- Add params to gstacks ref_mapping · 8f28b4d1
  khalid authored Jun 10, 2022
  
  8f28b4d1
30 May, 2022 9 commits
- Now filtering in trunclen = 120 · 9b6fa478
  khalid authored May 30, 2022
  
  9b6fa478
- remove maxEE params · 362e35c5
  khalid authored May 30, 2022
  
  362e35c5
- change SE params names · 57d82b6c
  khalid authored May 30, 2022
  
  57d82b6c
- change SE params names · 94e0efe6
  khalid authored May 30, 2022
  
  94e0efe6
- change SE params names · 6a9ae18e
  khalid authored May 30, 2022
  
  6a9ae18e
- change SE params names · 8d860c86
  khalid authored May 30, 2022
  
  8d860c86
- add the wright output for SE · 6a581291
  khalid authored May 30, 2022
  
  6a581291
- Set a link to swarm bin · f832d901
  khalid authored May 30, 2022
  
  f832d901
- Debug read_dir parsing · a4afc594
  khalid authored May 30, 2022
  
  a4afc594
25 May, 2022 3 commits
- set output type to fq.gz · 1950e8f1
  khalid authored May 25, 2022
  
  1950e8f1
- add input dir for forward reads · c4668b10
  khalid authored May 25, 2022
  
  c4668b10
- Remove id from taxonomy ident after DB convertion from FROGS format · 1b2179d0
  khalid authored May 25, 2022
  
  1b2179d0
24 May, 2022 3 commits
- Remove type · cd3a9242
  khalid authored May 24, 2022
  
  cd3a9242
- declare taxonomy dir as a data entry · 1b0f51ab
  khalid authored May 24, 2022
  
  1b0f51ab
- Add RDP for dada2 taxonomy DB · eb4923e4
  khalid authored May 24, 2022
  
  eb4923e4
19 May, 2022 5 commits
- change WFs names · f4878d26
  khalid authored May 19, 2022
  
  f4878d26
- change WFs names · a4f95969
  khalid authored May 19, 2022
  
  a4f95969
- change WFs names · 78f95a87
  khalid authored May 19, 2022
  
  78f95a87
- Add the RnaSeqDemo WF · b3ae824f
  khalid authored May 19, 2022
  
  b3ae824f
- change WFs names · 4981b934
  khalid authored May 19, 2022
  
  4981b934
17 May, 2022 1 commit
- rescue is r · 654c1fba
  khalid authored May 17, 2022
  
  654c1fba
16 May, 2022 5 commits
- rescue is r · 924e77f3
  khalid authored May 16, 2022
  
  924e77f3
- Deal with PE · bcdaf22b
  khalid authored May 16, 2022
  
  bcdaf22b
- Change tool's name · 2338bd93
  khalid authored May 16, 2022
  
  2338bd93
- process tags of randomly sheared genomic or transcriptomic data · 230efda6
  khalid authored May 16, 2022
  
  230efda6
- Update Lulu in example WFs · 72133f37
  khalid authored May 16, 2022
  
  72133f37
13 May, 2022 2 commits
- change some functions names · a0c4c839
  khalid authored May 13, 2022
  
  a0c4c839
- less verbose download · bcad6fa2
  khalid authored May 13, 2022
  
  bcad6fa2