params.total.yml 911 Bytes
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pipeline: Interop_report
params:
  results_dir: /Results
  sample_dir: /Data
  SeOrPe: PE
  interop_read_metrics: interop
  interop_output_dir: interop
  interop_analysis_dir: /Data
samples: []
groups: []
steps:
- title: Interop read metrics
  name: interop_read_metrics
  tools:
  - interop
  default: interop
params_info:
  results_dir:
    type: output_dir
  sample_dir:
    type: input_dir
  SeOrPe:
    type: radio
  interop_analysis_dir:
    tool: interop
    rule: interop
    type: input_dir
    label: 'Data directory: '
prepare_report_scripts: []
prepare_report_outputs: {}
outputs:
  interop:
    interop:
    - name: summary
      file: summary.csv
      description: Summary table
    - name: index_summary
      file: index_summary.csv
      description: Index summary table
    - name: dump_text
      file: dump_text.csv
      description: All Interop data as tables
multiqc:
  interop: interop