Debug (zcat -f to also use uncompressed files)

Genome_Profile/files/Snakefile

@@ -207,10 +207,10 @@ rule jellyfish_count:
         files = ""
         if (config["SeOrPe"] == "PE"):
             for r1,r2 in zip(inputs["read"],inputs["read2"]):
-                files += "<(zcat "+r1+") <(zcat "+r2+") "
+                files += "<(zcat -f "+r1+") <(zcat -f "+r2+") "
         else:
             for r in inputs["read"]:
-                files += "<(zcat "+r+") "
+                files += "<(zcat -f "+r+") "
         shell(
         "jellyfish count "+
         "{params.canonical_kmer} "+