Remove knitr library (unused)

Genome_Profile/sagApp/app.R

@@ -9,7 +9,6 @@ library(yaml)
 library(stringr)
 library(shinyFiles)
 library(tools)
-library(knitr)
 library(DT)
 
 
@@ -17,7 +16,6 @@ source("./R/chooser.R", local=T)
 
 source("./pages/pages_def_global_params.R", local=T)
 source("./pages/pages_def_preprocessing.R", local=T)
-source("./pages/pages_def_kmer_counting.R", local=T)
 source("./pages/pages_def_kmer_analysis.R", local=T)
 tabRULEGRAPH = fluidPage(box(title = 'Rule Graph :', width = 12, status = 'primary', collapsible = TRUE, solidHeader = TRUE, uiOutput('RULEGRAPH_svg'),actionButton('refresh_rg', 'Refresh',  icon('sync'), class='btn btn-info')))
 tabReport = fluidPage(box(title = 'Report :', width = 12, status = 'primary', collapsible = TRUE, solidHeader = TRUE, uiOutput('report_html')))
@@ -50,8 +48,6 @@ tags$head(style),
 
 	tabItem(tabName = "preprocessing",         tabpreprocessing),
 
-	tabItem(tabName = "kmer_counting",         tabkmer_counting),
-
 	tabItem(tabName = "kmer_analysis",         tabkmer_analysis)
 
 	,tabItem(tabName = "RULEGRAPH",         tabRULEGRAPH)

Interop_report/sagApp/app.R

@@ -9,7 +9,6 @@ library(yaml)
 library(stringr)
 library(shinyFiles)
 library(tools)
-library(knitr)
 library(DT)
 
 

Metabarcoding/sagApp/app.R

@@ -9,7 +9,6 @@ library(yaml)
 library(stringr)
 library(shinyFiles)
 library(tools)
-library(knitr)
 library(DT)
 
 

MitoZ/sagApp/app.R

@@ -9,7 +9,6 @@ library(yaml)
 library(stringr)
 library(shinyFiles)
 library(tools)
-library(knitr)
 library(DT)
 
 

Mito_Assembler_Megahit/sagApp/app.R

@@ -9,7 +9,6 @@ library(yaml)
 library(stringr)
 library(shinyFiles)
 library(tools)
-library(knitr)
 library(DT)
 
 

RADseq_denovo/sagApp/app.R

@@ -9,7 +9,6 @@ library(yaml)
 library(stringr)
 library(shinyFiles)
 library(tools)
-library(knitr)
 library(DT)
 
 

RADseq_ref/sagApp/app.R

@@ -9,7 +9,6 @@ library(yaml)
 library(stringr)
 library(shinyFiles)
 library(tools)
-library(knitr)
 library(DT)
 
 

RNAseq/sagApp/app.R

@@ -9,7 +9,6 @@ library(yaml)
 library(stringr)
 library(shinyFiles)
 library(tools)
-library(knitr)
 library(DT)
 
 

Variant_calling/sagApp/app.R

@@ -9,7 +9,6 @@ library(yaml)
 library(stringr)
 library(shinyFiles)
 library(tools)
-library(knitr)
 library(DT)
 
 

Virus_Assembler_Megahit/sagApp/app.R

@@ -9,7 +9,6 @@ library(yaml)
 library(stringr)
 library(shinyFiles)
 library(tools)
-library(knitr)
 library(DT)