Commit 2d2f6153 authored by mmassaviol's avatar mmassaviol
Browse files

Debug dockerfiles

parent 84e3c78b
......@@ -19,16 +19,18 @@ RUN cd /opt/biotools \
ENV LANG en_US.UTF-8
ENV LANGUAGE en_US:en
ENV LC_ALL en_US.UTF-8RUN mkdir -p /share/apps/bin
&& mkdir /share/apps/lib
&& mkdir /share/apps/gridengine
&& mkdir /share/bio
&& mkdir -p /opt/gridengine
&& mkdir -p /export/scrach
&& mkdir -p /usr/lib64
&& ln -s /bin/bash /bin/mbb_bash
&& ln -s /bin/bash /bin/isem_bash
&& /usr/sbin/groupadd --system --gid 400 sge
ENV LC_ALL en_US.UTF-8
RUN mkdir -p /share/apps/bin \
&& mkdir /share/apps/lib \
&& mkdir /share/apps/gridengine \
&& mkdir /share/bio \
&& mkdir -p /opt/gridengine \
&& mkdir -p /export/scrach \
&& mkdir -p /usr/lib64 \
&& ln -s /bin/bash /bin/mbb_bash \
&& ln -s /bin/bash /bin/isem_bash \
&& /usr/sbin/groupadd --system --gid 400 sge \
&& /usr/sbin/useradd --system --uid 400 --gid 400 -c GridEngine --shell /bin/true --home /opt/gridengine sge
EXPOSE 3838
......
......@@ -13,16 +13,18 @@ RUN apt install -y gnuplot
ENV LANG en_US.UTF-8
ENV LANGUAGE en_US:en
ENV LC_ALL en_US.UTF-8RUN mkdir -p /share/apps/bin
&& mkdir /share/apps/lib
&& mkdir /share/apps/gridengine
&& mkdir /share/bio
&& mkdir -p /opt/gridengine
&& mkdir -p /export/scrach
&& mkdir -p /usr/lib64
&& ln -s /bin/bash /bin/mbb_bash
&& ln -s /bin/bash /bin/isem_bash
&& /usr/sbin/groupadd --system --gid 400 sge
ENV LC_ALL en_US.UTF-8
RUN mkdir -p /share/apps/bin \
&& mkdir /share/apps/lib \
&& mkdir /share/apps/gridengine \
&& mkdir /share/bio \
&& mkdir -p /opt/gridengine \
&& mkdir -p /export/scrach \
&& mkdir -p /usr/lib64 \
&& ln -s /bin/bash /bin/mbb_bash \
&& ln -s /bin/bash /bin/isem_bash \
&& /usr/sbin/groupadd --system --gid 400 sge \
&& /usr/sbin/useradd --system --uid 400 --gid 400 -c GridEngine --shell /bin/true --home /opt/gridengine sge
EXPOSE 3838
......
......@@ -59,16 +59,18 @@ RUN cd /opt/biotools \
ENV LANG en_US.UTF-8
ENV LANGUAGE en_US:en
ENV LC_ALL en_US.UTF-8RUN mkdir -p /share/apps/bin
&& mkdir /share/apps/lib
&& mkdir /share/apps/gridengine
&& mkdir /share/bio
&& mkdir -p /opt/gridengine
&& mkdir -p /export/scrach
&& mkdir -p /usr/lib64
&& ln -s /bin/bash /bin/mbb_bash
&& ln -s /bin/bash /bin/isem_bash
&& /usr/sbin/groupadd --system --gid 400 sge
ENV LC_ALL en_US.UTF-8
RUN mkdir -p /share/apps/bin \
&& mkdir /share/apps/lib \
&& mkdir /share/apps/gridengine \
&& mkdir /share/bio \
&& mkdir -p /opt/gridengine \
&& mkdir -p /export/scrach \
&& mkdir -p /usr/lib64 \
&& ln -s /bin/bash /bin/mbb_bash \
&& ln -s /bin/bash /bin/isem_bash \
&& /usr/sbin/groupadd --system --gid 400 sge \
&& /usr/sbin/useradd --system --uid 400 --gid 400 -c GridEngine --shell /bin/true --home /opt/gridengine sge
EXPOSE 3838
......
......@@ -28,16 +28,18 @@ RUN cd /opt/biotools \
ENV LANG en_US.UTF-8
ENV LANGUAGE en_US:en
ENV LC_ALL en_US.UTF-8RUN mkdir -p /share/apps/bin
&& mkdir /share/apps/lib
&& mkdir /share/apps/gridengine
&& mkdir /share/bio
&& mkdir -p /opt/gridengine
&& mkdir -p /export/scrach
&& mkdir -p /usr/lib64
&& ln -s /bin/bash /bin/mbb_bash
&& ln -s /bin/bash /bin/isem_bash
&& /usr/sbin/groupadd --system --gid 400 sge
ENV LC_ALL en_US.UTF-8
RUN mkdir -p /share/apps/bin \
&& mkdir /share/apps/lib \
&& mkdir /share/apps/gridengine \
&& mkdir /share/bio \
&& mkdir -p /opt/gridengine \
&& mkdir -p /export/scrach \
&& mkdir -p /usr/lib64 \
&& ln -s /bin/bash /bin/mbb_bash \
&& ln -s /bin/bash /bin/isem_bash \
&& /usr/sbin/groupadd --system --gid 400 sge \
&& /usr/sbin/useradd --system --uid 400 --gid 400 -c GridEngine --shell /bin/true --home /opt/gridengine sge
EXPOSE 3838
......
......@@ -61,16 +61,18 @@ RUN cd /opt/biotools \
ENV LANG en_US.UTF-8
ENV LANGUAGE en_US:en
ENV LC_ALL en_US.UTF-8RUN mkdir -p /share/apps/bin
&& mkdir /share/apps/lib
&& mkdir /share/apps/gridengine
&& mkdir /share/bio
&& mkdir -p /opt/gridengine
&& mkdir -p /export/scrach
&& mkdir -p /usr/lib64
&& ln -s /bin/bash /bin/mbb_bash
&& ln -s /bin/bash /bin/isem_bash
&& /usr/sbin/groupadd --system --gid 400 sge
ENV LC_ALL en_US.UTF-8
RUN mkdir -p /share/apps/bin \
&& mkdir /share/apps/lib \
&& mkdir /share/apps/gridengine \
&& mkdir /share/bio \
&& mkdir -p /opt/gridengine \
&& mkdir -p /export/scrach \
&& mkdir -p /usr/lib64 \
&& ln -s /bin/bash /bin/mbb_bash \
&& ln -s /bin/bash /bin/isem_bash \
&& /usr/sbin/groupadd --system --gid 400 sge \
&& /usr/sbin/useradd --system --uid 400 --gid 400 -c GridEngine --shell /bin/true --home /opt/gridengine sge
EXPOSE 3838
......
......@@ -71,16 +71,18 @@ RUN cd /opt/biotools \
ENV LANG en_US.UTF-8
ENV LANGUAGE en_US:en
ENV LC_ALL en_US.UTF-8RUN mkdir -p /share/apps/bin
&& mkdir /share/apps/lib
&& mkdir /share/apps/gridengine
&& mkdir /share/bio
&& mkdir -p /opt/gridengine
&& mkdir -p /export/scrach
&& mkdir -p /usr/lib64
&& ln -s /bin/bash /bin/mbb_bash
&& ln -s /bin/bash /bin/isem_bash
&& /usr/sbin/groupadd --system --gid 400 sge
ENV LC_ALL en_US.UTF-8
RUN mkdir -p /share/apps/bin \
&& mkdir /share/apps/lib \
&& mkdir /share/apps/gridengine \
&& mkdir /share/bio \
&& mkdir -p /opt/gridengine \
&& mkdir -p /export/scrach \
&& mkdir -p /usr/lib64 \
&& ln -s /bin/bash /bin/mbb_bash \
&& ln -s /bin/bash /bin/isem_bash \
&& /usr/sbin/groupadd --system --gid 400 sge \
&& /usr/sbin/useradd --system --uid 400 --gid 400 -c GridEngine --shell /bin/true --home /opt/gridengine sge
EXPOSE 3838
......
......@@ -21,16 +21,18 @@ RUN Rscript -e 'BiocManager::install("SNPRelate", version = "3.8",Ncpus=8, clean
ENV LANG en_US.UTF-8
ENV LANGUAGE en_US:en
ENV LC_ALL en_US.UTF-8RUN mkdir -p /share/apps/bin
&& mkdir /share/apps/lib
&& mkdir /share/apps/gridengine
&& mkdir /share/bio
&& mkdir -p /opt/gridengine
&& mkdir -p /export/scrach
&& mkdir -p /usr/lib64
&& ln -s /bin/bash /bin/mbb_bash
&& ln -s /bin/bash /bin/isem_bash
&& /usr/sbin/groupadd --system --gid 400 sge
ENV LC_ALL en_US.UTF-8
RUN mkdir -p /share/apps/bin \
&& mkdir /share/apps/lib \
&& mkdir /share/apps/gridengine \
&& mkdir /share/bio \
&& mkdir -p /opt/gridengine \
&& mkdir -p /export/scrach \
&& mkdir -p /usr/lib64 \
&& ln -s /bin/bash /bin/mbb_bash \
&& ln -s /bin/bash /bin/isem_bash \
&& /usr/sbin/groupadd --system --gid 400 sge \
&& /usr/sbin/useradd --system --uid 400 --gid 400 -c GridEngine --shell /bin/true --home /opt/gridengine sge
EXPOSE 3838
......
......@@ -44,16 +44,18 @@ RUN Rscript -e 'BiocManager::install("SNPRelate", version = "3.8",Ncpus=8, clean
ENV LANG en_US.UTF-8
ENV LANGUAGE en_US:en
ENV LC_ALL en_US.UTF-8RUN mkdir -p /share/apps/bin
&& mkdir /share/apps/lib
&& mkdir /share/apps/gridengine
&& mkdir /share/bio
&& mkdir -p /opt/gridengine
&& mkdir -p /export/scrach
&& mkdir -p /usr/lib64
&& ln -s /bin/bash /bin/mbb_bash
&& ln -s /bin/bash /bin/isem_bash
&& /usr/sbin/groupadd --system --gid 400 sge
ENV LC_ALL en_US.UTF-8
RUN mkdir -p /share/apps/bin \
&& mkdir /share/apps/lib \
&& mkdir /share/apps/gridengine \
&& mkdir /share/bio \
&& mkdir -p /opt/gridengine \
&& mkdir -p /export/scrach \
&& mkdir -p /usr/lib64 \
&& ln -s /bin/bash /bin/mbb_bash \
&& ln -s /bin/bash /bin/isem_bash \
&& /usr/sbin/groupadd --system --gid 400 sge \
&& /usr/sbin/useradd --system --uid 400 --gid 400 -c GridEngine --shell /bin/true --home /opt/gridengine sge
EXPOSE 3838
......
......@@ -44,16 +44,18 @@ RUN Rscript -e 'BiocManager::install("BiocParallel", version = "3.8",Ncpus=8, cl
ENV LANG en_US.UTF-8
ENV LANGUAGE en_US:en
ENV LC_ALL en_US.UTF-8RUN mkdir -p /share/apps/bin
&& mkdir /share/apps/lib
&& mkdir /share/apps/gridengine
&& mkdir /share/bio
&& mkdir -p /opt/gridengine
&& mkdir -p /export/scrach
&& mkdir -p /usr/lib64
&& ln -s /bin/bash /bin/mbb_bash
&& ln -s /bin/bash /bin/isem_bash
&& /usr/sbin/groupadd --system --gid 400 sge
ENV LC_ALL en_US.UTF-8
RUN mkdir -p /share/apps/bin \
&& mkdir /share/apps/lib \
&& mkdir /share/apps/gridengine \
&& mkdir /share/bio \
&& mkdir -p /opt/gridengine \
&& mkdir -p /export/scrach \
&& mkdir -p /usr/lib64 \
&& ln -s /bin/bash /bin/mbb_bash \
&& ln -s /bin/bash /bin/isem_bash \
&& /usr/sbin/groupadd --system --gid 400 sge \
&& /usr/sbin/useradd --system --uid 400 --gid 400 -c GridEngine --shell /bin/true --home /opt/gridengine sge
EXPOSE 3838
......
......@@ -60,16 +60,18 @@ RUN apt install -y tabix
ENV LANG en_US.UTF-8
ENV LANGUAGE en_US:en
ENV LC_ALL en_US.UTF-8RUN mkdir -p /share/apps/bin
&& mkdir /share/apps/lib
&& mkdir /share/apps/gridengine
&& mkdir /share/bio
&& mkdir -p /opt/gridengine
&& mkdir -p /export/scrach
&& mkdir -p /usr/lib64
&& ln -s /bin/bash /bin/mbb_bash
&& ln -s /bin/bash /bin/isem_bash
&& /usr/sbin/groupadd --system --gid 400 sge
ENV LC_ALL en_US.UTF-8
RUN mkdir -p /share/apps/bin \
&& mkdir /share/apps/lib \
&& mkdir /share/apps/gridengine \
&& mkdir /share/bio \
&& mkdir -p /opt/gridengine \
&& mkdir -p /export/scrach \
&& mkdir -p /usr/lib64 \
&& ln -s /bin/bash /bin/mbb_bash \
&& ln -s /bin/bash /bin/isem_bash \
&& /usr/sbin/groupadd --system --gid 400 sge \
&& /usr/sbin/useradd --system --uid 400 --gid 400 -c GridEngine --shell /bin/true --home /opt/gridengine sge
EXPOSE 3838
......
......@@ -45,16 +45,18 @@ RUN cd /opt/biotools \
ENV LANG en_US.UTF-8
ENV LANGUAGE en_US:en
ENV LC_ALL en_US.UTF-8RUN mkdir -p /share/apps/bin
&& mkdir /share/apps/lib
&& mkdir /share/apps/gridengine
&& mkdir /share/bio
&& mkdir -p /opt/gridengine
&& mkdir -p /export/scrach
&& mkdir -p /usr/lib64
&& ln -s /bin/bash /bin/mbb_bash
&& ln -s /bin/bash /bin/isem_bash
&& /usr/sbin/groupadd --system --gid 400 sge
ENV LC_ALL en_US.UTF-8
RUN mkdir -p /share/apps/bin \
&& mkdir /share/apps/lib \
&& mkdir /share/apps/gridengine \
&& mkdir /share/bio \
&& mkdir -p /opt/gridengine \
&& mkdir -p /export/scrach \
&& mkdir -p /usr/lib64 \
&& ln -s /bin/bash /bin/mbb_bash \
&& ln -s /bin/bash /bin/isem_bash \
&& /usr/sbin/groupadd --system --gid 400 sge \
&& /usr/sbin/useradd --system --uid 400 --gid 400 -c GridEngine --shell /bin/true --home /opt/gridengine sge
EXPOSE 3838
......
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