FROM mmassaviol/mbb_workflows_base:latest

COPY files /workflow
COPY sagApp /sagApp

ENV PATH /opt/biotools/InterOp-1.1.8-Linux-GNU/bin/:$PATH 
RUN cd /opt/biotools \
 && wget https://github.com/Illumina/interop/releases/download/v1.1.8/InterOp-1.1.8-Linux-GNU.tar.gz \
 && tar -xvzf InterOp-1.1.8-Linux-GNU.tar.gz \
 && rm InterOp-1.1.8-Linux-GNU.tar.gz

RUN apt install -y gnuplot

EXPOSE 3838
CMD ["Rscript", "-e", "setwd('/sagApp/'); shiny::runApp('/sagApp/app.R',port=3838 , host='0.0.0.0')"]