change chromosome file name in radsex_map

0d010178 · khalid · fb9ae52b · 0d010178
Commit 0d010178 authored Oct 11, 2021 by khalid
--- a/tools/radsex_map/radsex_map.prepare.report.R
+++ b/tools/radsex_map/radsex_map.prepare.report.R
@@ -7,7 +7,7 @@ args = commandArgs(trailingOnly=TRUE)
 parameters = read_yaml(args[1])$params

 chemin= paste0(parameters$results_dir,"/",parameters$<step_name>__radsex_map_output_dir)
-chromosome_file = parameters$<step_name>__chromosome_file
+chromosome_file = parameters$<step_name>__radsex_map_chromosome_file
 fichiers = paste0(chemin, "/map_results.tsv")
 output_file = paste(parameters$results_dir,parameters$<step_name>__radsex_map_output_dir,"Mapping_genome_radsex_map_mqc.png",sep = "/")