bcftools on vcfFile don't need a merging step

tools/bcftools_vcfFile_stats/bcftools_vcfFile_stats.rule.snakefile

@@ -2,17 +2,17 @@ rule <step_name>__bcftools_vcfFile_stats:
     input:
         **<step_name>__bcftools_vcfFile_stats_inputs(),
     output: 
-        stats = config["results_dir"] + "/" + config["<step_name>__bcftools_vcfFile_stats_output_dir"] + "/Allsamples_vcf_stats.txt",
-        stats_image = config["results_dir"] + "/" + config["<step_name>__bcftools_vcfFile_stats_output_dir"] + "/Allsamples_stats_mqc.png",
+        stats = config["results_dir"] + "/" + config["<step_name>__bcftools_vcfFile_stats_output_dir"] + "/vcf_stats.txt",
+        stats_image = config["results_dir"] + "/" + config["<step_name>__bcftools_vcfFile_stats_output_dir"] + "/bcftools_stats_mqc.png",
     params: 
-        output_dir = config["results_dir"] + "/" + config["<step_name>__bcftools_vcfFile_stats_output_dir"]+ "/Allsamples",
+        output_dir = config["results_dir"] + "/" + config["<step_name>__bcftools_vcfFile_stats_output_dir"],
         command = config["<step_name>__bcftools_vcfFile_stats_command"],
     log: 
-        config["results_dir"] + "/logs/" + config["<step_name>__bcftools_vcfFile_stats_output_dir"] + "/Allsamples_bcftools_vcfFile_stats_log.txt"
+        config["results_dir"] + "/logs/" + config["<step_name>__bcftools_vcfFile_stats_output_dir"] + "/bcftools_vcfFile_stats_log.txt"
     shell: 
         "{params.command} "
         "-s - "
-        "{params.output_dir}.vcf.gz "
+        "{input.vcf} "
         "> {output.stats} "
         "2> {log}; "
         "plot-vcfstats "

tools/bcftools_vcfFile_stats/bcftools_vcfFile_stats.yaml

@@ -30,13 +30,13 @@
             {
               name: "stats",
               type: "txt",
-              file: "Allsamples_vcf_stats.txt",
+              file: "vcf_stats.txt",
               description: "VCF file stats",
             },
             {
               name: "stats_image",
               type: "png",
-              file: "Allsamples_stats_mqc.png",
+              file: "stats_mqc.png",
               description: "VCF file stats graphs",
             }
           ],