debug deseq2

tools/deseq2/deseq2.rule.snakefile

@@ -14,6 +14,6 @@ rule <step_name>__deseq2:
         script = config["<step_name>__deseq2_command"],
         tx2gene = config["<step_name>__deseq2_tx2gene"],
         annotations = config["<step_name>__deseq2_annotations"],
-        biomaRtDataset = = config["<step_name>__deseq2_biomaRtDataset"],
+        biomaRtDataset = config["<step_name>__deseq2_biomaRtDataset"],
     script:
         config["<step_name>__deseq2_script"]
\ No newline at end of file

tools/htseq_count/htseq_count.yaml

@@ -56,7 +56,7 @@
                   Position: "pos",
                   Name: "name"
                 ],
-              value: "position",
+              value: "pos",
               label: "the way that alignment have been sorted (either by read name or by alignment position).",
             },
           ],