Commit 82a1e0c1 authored by khalid's avatar khalid
Browse files

fastp report title

parent cb384fe6
......@@ -11,7 +11,7 @@ if config["SeOrPe"] == "PE":
params:
command = config["<step_name>__fastp_PE_command"],
complexity_threshold = config["<step_name>__fastp_complexity_threshold"],
report_title = config["<step_name>__fastp_report_title"],
report_title = config["<step_name>__fastp_report_title"]+" : "+{sample},
detect_adapter_for_pe = "--detect_adapter_for_pe" if config["<step_name>__fastp_adapter_detection_PE"] == True else "",
adapter_sequence = "--adapter_sequence "+config["<step_name>__fastp_adapter_sequence"] if config["<step_name>__fastp_adapter_sequence"] != "" else "",
adapter_sequence_R2 = "--adapter_sequence_r2 " + config["<step_name>__fastp_adapter_sequence_R2_PE"] if config["<step_name>__fastp_adapter_sequence_R2_PE"] != "" else "",
......@@ -36,7 +36,7 @@ if config["SeOrPe"] == "PE":
"--complexity_threshold {params.complexity_threshold} "
"--html {output.report_html} "
"--json {output.report_json} "
"--report_title '{params.report_title} : {sample}' "
"--report_title '{params.report_title}' "
"{params.detect_adapter_for_pe} "
"{params.adapter_sequence} "
"{params.adapter_sequence_R2} "
......
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