Commit 90452403 authored by khalid's avatar khalid
Browse files

debug blastn

parent 08bba848
......@@ -8,8 +8,8 @@ def <step_name>__db():
db_path = os.path.dirname(files[0])
# if from makeblastdb step
else:
db_name = os.path.basename(os.path.splitext(input.blastdb[0])[0])
db_path = os.path.dirname(input.blastdb[0])
db_name = os.path.basename(os.path.splitext(input.<step_name>__makeblastdb[0])[0])
db_path = os.path.dirname(input.<step_name>__makeblastdb[0])
return { "db_name": db_name, "db_path": db_path }
......
{
id: hisat2,
name: Bowtie2,
name: Howtie2,
article: Kim, D., Paggi, J.M., Park, C. et al. Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype. Nat Biotechnol 37, 907-915 (2019).,
website: "http://daehwankimlab.github.io/hisat2/",
git: "http://daehwankimlab.github.io/hisat2/",
......
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