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mmassaviol
WAWmassaviol
Commits
90452403
Commit
90452403
authored
Sep 30, 2021
by
khalid
Browse files
debug blastn
parent
08bba848
Changes
2
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tools/blastn/blastn.rule.snakefile
View file @
90452403
...
...
@@ -8,8 +8,8 @@ def <step_name>__db():
db_path = os.path.dirname(files[0])
# if from makeblastdb step
else:
db_name = os.path.basename(os.path.splitext(input.blastdb[0])[0])
db_path = os.path.dirname(input.blastdb[0])
db_name = os.path.basename(os.path.splitext(input.
<step_name>__make
blastdb[0])[0])
db_path = os.path.dirname(input.
<step_name>__make
blastdb[0])
return { "db_name": db_name, "db_path": db_path }
...
...
tools/hisat2/hisat2.yaml
View file @
90452403
{
id
:
hisat2
,
name
:
B
owtie2
,
name
:
H
owtie2
,
article
:
Kim
,
D.
,
Paggi
,
J.M.
,
Park
,
C. et al. Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype. Nat Biotechnol 37
,
907-915 (2019).
,
website
:
"
http://daehwankimlab.github.io/hisat2/"
,
git
:
"
http://daehwankimlab.github.io/hisat2/"
,
...
...
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