Skip to content
GitLab
Menu
Projects
Groups
Snippets
Loading...
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
Menu
Open sidebar
mmassaviol
WAWmassaviol
Commits
924785ca
Commit
924785ca
authored
Sep 15, 2021
by
khalid
Browse files
change pca varprop name
parent
1b20c460
Changes
2
Hide whitespace changes
Inline
Side-by-side
tools/pca_gds/pca_gds.rule.snakefile
View file @
924785ca
...
...
@@ -6,7 +6,7 @@ rule <step_name>__pca_gds:
output:
eigenvectors = config["results_dir"] + "/" + config["<step_name>__pca_gds_output_dir"] + "/" + <step_name>__pca_gds_gds_name + "_eigenvects.txt",
eigenvalues = config["results_dir"] + "/" + config["<step_name>__pca_gds_output_dir"] + "/" + <step_name>__pca_gds_gds_name + "_eigenvals.txt",
varprop = config["results_dir"] + "/" + config["<step_name>__pca_gds_output_dir"] + "/varprop_mqc.txt",
varprop = config["results_dir"] + "/" + config["<step_name>__pca_gds_output_dir"] + "/
pca_
varprop_mqc.txt",
pca_png = config["results_dir"] + "/" + config["<step_name>__pca_gds_output_dir"] + "/pca_topaxes_plot_mqc.png",
axe1axe2_png = config["results_dir"] + "/" + config["<step_name>__pca_gds_output_dir"] + "/pca_axe1axe2_plot_mqc.png",
params:
...
...
tools/pca_gds/pca_gds.yaml
View file @
924785ca
...
...
@@ -21,7 +21,7 @@
outputs
:
[
{
name
:
eigenvectors
,
type
:
"
txt"
,
file
:
"
*_eigenvects.txt"
,
description
:
"
Eigenvectors"
},
{
name
:
eigenvalues
,
type
:
"
txt"
,
file
:
"
*_eigenvals.txt"
,
description
:
"
Eigenvalues"
},
{
name
:
varprop
,
type
:
"
txt"
,
file
:
"
varprop_mqc.txt"
,
description
:
"
variance
proportion
"
},
{
name
:
varprop
,
type
:
"
txt"
,
file
:
"
pca_
varprop_mqc.txt"
,
description
:
"
variance
proportion
"
},
{
name
:
pca_png
,
type
:
"
png"
,
file
:
"
pca_topaxes_plot_mqc.png"
,
description
:
"
First
6
eigenvectors
plots"
},
{
name
:
axe1axe2_png
,
type
:
"
png"
,
file
:
"
pca_axe1axe2_plot_mqc.png"
,
description
:
"
First
2
eigenvectors
plots"
},
],
...
...
Write
Preview
Markdown
is supported
0%
Try again
or
attach a new file
.
Attach a file
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment