Commit a18cc47b authored by khalid's avatar khalid
Browse files

Add a gff3 raw reader

parent 7a75426a
{
name: raw_gds,
function_call: "raw_gds(config['results_dir'], config['popmap_file'])",
function_call: "raw_gds(config['results_dir'], config['gds_file'])",
options: [
{
name: "popmap_file",
name: "gds_file",
type: "input_file",
value: "/Data",
label: "snp data in GDS file format: ",
......
import os
import re
import sys
def raw_vcf(results_dir, sample_dir):
samples = list()
out = dict()
out["gds"] = input_dir
return out
#print(raw_gff3(sys.argv[1],sys.argv[2]))
\ No newline at end of file
{
name: raw_gff3,
function_call: "raw_gff3(config['results_dir'], config['sample_dir'])",
options: [
{
name: "sample_dir",
type: "input_dir",
value: "/Data",
label: "gff3 file: ",
volumes: [Data: "/Data", Results: "/Results"]
},
]
}
\ No newline at end of file
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