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mmassaviol
WAWmassaviol
Commits
a18cc47b
Commit
a18cc47b
authored
Oct 04, 2021
by
khalid
Browse files
Add a gff3 raw reader
parent
7a75426a
Changes
3
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raw_inputs/raw_gds.yaml
View file @
a18cc47b
{
name
:
raw_gds
,
function_call
:
"
raw_gds(config['results_dir'],
config['
popmap
_file'])"
,
function_call
:
"
raw_gds(config['results_dir'],
config['
gds
_file'])"
,
options
:
[
{
name
:
"
popmap
_file"
,
name
:
"
gds
_file"
,
type
:
"
input_file"
,
value
:
"
/Data"
,
label
:
"
snp
data
in
GDS
file
format:
"
,
...
...
raw_inputs/raw_gff3.py
0 → 100755
View file @
a18cc47b
import
os
import
re
import
sys
def
raw_vcf
(
results_dir
,
sample_dir
):
samples
=
list
()
out
=
dict
()
out
[
"gds"
]
=
input_dir
return
out
#print(raw_gff3(sys.argv[1],sys.argv[2]))
\ No newline at end of file
raw_inputs/raw_gff3.yaml
0 → 100755
View file @
a18cc47b
{
name
:
raw_gff3
,
function_call
:
"
raw_gff3(config['results_dir'],
config['sample_dir'])"
,
options
:
[
{
name
:
"
sample_dir"
,
type
:
"
input_dir"
,
value
:
"
/Data"
,
label
:
"
gff3
file:
"
,
volumes
:
[
Data
:
"
/Data"
,
Results
:
"
/Results"
]
},
]
}
\ No newline at end of file
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