Commit cb384fe6 authored by khalid's avatar khalid
Browse files

Fastqc now declared output is only a logfile

parent d7e0ddfe
......@@ -19,8 +19,9 @@
inputs: [{ name: read, type: "reads" }],
outputs:
[
{ name: html, type: "html", file: "{sample}_fastqc.html", description: "Rapport html fastqc" },
{ name: zip, type: "zip", file: "{sample}_fastqc.zip", description: "Dossier zip fastqc" },
#{ name: html, type: "html", file: "{sample}_fastqc.html", description: "Rapport html fastqc" },
#{ name: zip, type: "zip", file: "{sample}_fastqc.zip", description: "Dossier zip fastqc" },
{ name: logFile, type: "txt", file: "{sample}_fastqc_log.txt", description: "log fastqc" },
],
options:
[
......@@ -35,10 +36,11 @@
inputs: [{ name: read, type: "reads" }, { name: read2, type: "reads" }],
outputs:
[
{ name: html1, type: "html", file: "{sample}_<R>1_fastqc.html", description: "Rapport html fastqc" },
{ name: zip1, type: "zip", file: "{sample}_<R>1_fastqc.zip", description: "Dossier zip fastqc" },
{ name: html2, type: "html", file: "{sample}_<R>2_fastqc.html", description: "Rapport html fastqc" },
{ name: zip2, type: "zip", file: "{sample}_<R>2_fastqc.zip", description: "Dossier zip fastqc" },
#{ name: html1, type: "html", file: "{sample}_<R>1_fastqc.html", description: "Rapport html fastqc" },
#{ name: zip1, type: "zip", file: "{sample}_<R>1_fastqc.zip", description: "Dossier zip fastqc" },
#{ name: html2, type: "html", file: "{sample}_<R>2_fastqc.html", description: "Rapport html fastqc" },
#{ name: zip2, type: "zip", file: "{sample}_<R>2_fastqc.zip", description: "Dossier zip fastqc" },
{ name: logFile, type: "txt", file: "{sample}_fastqc_log.txt", description: "log fastqc" },
],
options:
[
......
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