Commit d80d8daa authored by khalid's avatar khalid
Browse files

debug fastp

parent 81756677
......@@ -52,6 +52,12 @@
value: "fastp report",
label: "fastp report title",
},
{
name: "fastp_adapter_detection_PE",
type: "checkbox",
value: TRUE,
label: "adapter sequence auto-detection is disabled by default since the adapters can be trimmed by overlap analysis. However, you can specify --detect_adapter_for_pe to enable it",
},
{
name: fastp_adapter_sequence,
prefix: --adapter_sequence,
......@@ -74,7 +80,7 @@
min: 1,
max: NA,
step: 1,
label: "One in (--overrepresentation_sampling) reads will be computed for overrepresentation analysis (1~10000), smaller is slower.",
label: "For example, if you set -P 100, only 1/100 reads will be used for counting, and if you set -P 1, all reads will be used and slower.",
},
{
name: "fastp_correction_PE",
......@@ -137,12 +143,6 @@
value: "fastp report",
label: "fastp report title",
},
{
name: "fastp_adapter_detection_PE",
type: "checkbox",
value: TRUE,
label: "adapter sequence auto-detection is disabled by default since the adapters can be trimmed by overlap analysis. However, you can specify --detect_adapter_for_pe to enable it",
},
{
name: fastp_adapter_sequence,
prefix: --adapter_sequence,
......
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