Commit e9a99b60 authored by khalid's avatar khalid
Browse files

bcftools on vcfFile don't need a merging step

parent 859f1e3f
......@@ -10,7 +10,6 @@ rule <step_name>__bcftools_vcfFile_stats:
log:
config["results_dir"] + "/logs/" + config["<step_name>__bcftools_vcfFile_stats_output_dir"] + "/Allsamples_bcftools_vcfFile_stats_log.txt"
shell:
"bcftools merge {input.vcf} | bgzip > {params.output_dir}.vcf.gz ; "
"{params.command} "
"-s - "
"{params.output_dir}.vcf.gz "
......
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