change json dir

workflows/global_rules.snakefile

@@ -140,7 +140,7 @@ rule all:
         "cp /workflow/Snakefile {output.Snakefile} && "
         "cp -r /workflow/scripts {output.scripts} && "
         "cp {params.params_file} {output.params} &&"
-        "cp /workflow/files/*.json {output.json} "
+        "cp /workflow/*.json {output.json} "
 
 onsuccess:
     print("Workflow finished with SUCCESS")