Commits · 1dc8d0e205d3725f4ca38acad58ba11403a42faf · mmassaviol / WAWmassaviol

03 Sep, 2021 6 commits
- chnage Fst title · 1dc8d0e2
  khalid authored Sep 03, 2021
  
  1dc8d0e2
- add Relatedness calc · e8cceda8
  khalid authored Sep 03, 2021
  
  e8cceda8
- Deal with cases where there less than two pops for Fst · 61cc3b6b
  khalid authored Sep 03, 2021
  
  61cc3b6b
- Deal with cases where there less than two pops for Fst · d92cc784
  khalid authored Sep 03, 2021
  
  d92cc784
- Names for Fst rule · 67a9a8db
  khalid authored Sep 03, 2021
  
  67a9a8db
- Names for Fst rule · 77e8814b
  khalid authored Sep 03, 2021
  
  77e8814b
02 Sep, 2021 6 commits
- Add W&C pairwise Fst calculation · 053c3ad7
  khalid authored Sep 02, 2021
  
  053c3ad7
- add missing library to prune vcf · 9be48b96
  khalid authored Sep 02, 2021
  
  9be48b96
- add incrementation values to vcf2gds params · 64e6968d
  khalid authored Sep 02, 2021
  
  64e6968d
- LD prunning option enhancements · 9fa11be3
  khalid authored Sep 02, 2021
  
  9fa11be3
- Add a script to convert vcf2gds whit LD prunning option · c6bedf93
  khalid authored Sep 02, 2021
  
  c6bedf93
- Add top 2 axis plot · 455fbbb7
  khalid authored Sep 02, 2021
  
  455fbbb7
01 Sep, 2021 2 commits
- move shell command in script for pca · 4e4fdc24
  khalid authored Sep 01, 2021
  
  4e4fdc24
- Add mqc output to pca · 154fab18
  khalid authored Sep 01, 2021
  
  154fab18
31 Aug, 2021 8 commits
- pca debug · 900726b7
  khalid authored Aug 31, 2021
  
  900726b7
- pca to genet_pop category · 324fa128
  khalid authored Aug 31, 2021
  
  324fa128
- add outputs to pca · 0b5688b1
  khalid authored Aug 31, 2021
  
  0b5688b1
- add SNPRelate PCA on gds file · 2a2db086
  khalid authored Aug 31, 2021
  
  2a2db086
- Eviter de generer la variable SAMPLES dans le cas di vcfFile · 24e636d3
  khalid authored Aug 31, 2021
  
  24e636d3
- Add a single vcf file raw input · 54abf568
  khalid authored Aug 31, 2021
  
  54abf568
- Add way to deal with gds format for snp variants · 27138767
  khalid authored Aug 31, 2021
  
  27138767
- Add way to deal with gds format for snp variants · cc663b0e
  khalid authored Aug 31, 2021
  
  cc663b0e
27 Aug, 2021 9 commits
- debug plot_sample_qc in Interop · cdaddcf7
  khalid authored Aug 27, 2021
  
  cdaddcf7
- remove SE PE from raw_illumina_dir · 2b781c9a
  khalid authored Aug 27, 2021
  
  2b781c9a
- Add plot_sample_qc to Interop · c8a5f025
  khalid authored Aug 27, 2021
  
  c8a5f025
- raw_illumina name change · 96d1f32e
  khalid authored Aug 27, 2021
  
  96d1f32e
- raw_illumina name change · 33407e55
  khalid authored Aug 27, 2021
  
  33407e55
- Interop add a fake option · 58b262f7
  khalid authored Aug 27, 2021
  
  58b262f7
- Interop typos · 6269c751
  khalid authored Aug 27, 2021
  
  6269c751
- Interop typos · d165369d
  khalid authored Aug 27, 2021
  
  d165369d
- Changes to get a raw dir of Interop files · ee8490a4
  khalid authored Aug 27, 2021
  
  ee8490a4
17 Aug, 2021 2 commits
- Remove CMP normalization which is done inside radsex c++ code · 4ef9ce16
  khalid authored Aug 17, 2021
  
  4ef9ce16
- Use CPM for reads counts in processTagged · ce8a3c6a
  khalid authored Aug 17, 2021
  
  ce8a3c6a
13 Aug, 2021 1 commit
- Deal with cases with no significant markers · d79d6777
  khalid authored Aug 13, 2021
  
  d79d6777
11 Aug, 2021 2 commits
- Add processTagged option to create locus from indexed reads with variable tags size · 7bf1bc46
  khalid authored Aug 11, 2021
  
  7bf1bc46
- Add processTagged option to create locus from indexed reads with variable tags size · bd9258ed
  khalid authored Aug 11, 2021
  
  bd9258ed
06 Aug, 2021 2 commits
- popmap raw files · 48a8e94f
  khalid authored Aug 06, 2021
  
  48a8e94f
- Add a raw popmap to ease radsex inputs · 94051bcf
  khalid authored Aug 06, 2021
  
  94051bcf
03 Aug, 2021 2 commits
- Merge branch 'radsex' into 'master' · 61971d4e
  abensaid authored Aug 03, 2021
```
Radsex

See merge request mmassaviol/waw!6
```
  61971d4e
- Radsex · 50691174
  abensaid authored Aug 03, 2021
  
  50691174