Commits · 1ed6822d33b7b538ee64e874cb46269fff5575cf · mmassaviol / WAWmassaviol

06 Oct, 2021 2 commits
- EdgeR and deseq2 use an expandable input · 1ed6822d
  khalid authored Oct 06, 2021
  
  1ed6822d
- EdgeR and deseq2 use an expandable input · 4ad900d6
  khalid authored Oct 06, 2021
  
  4ad900d6
04 Oct, 2021 13 commits
- Add a group_file inpput to edger and deseq2 · 56971a55
  khalid authored Oct 04, 2021
  
  56971a55
- Use htseq-count and hisat2 multiqc modules · 1457d60f
  khalid authored Oct 04, 2021
  
  1457d60f
- debug htseq-count · c2680e81
  khalid authored Oct 04, 2021
  
  c2680e81
- debug htseq-count · 3bab8250
  khalid authored Oct 04, 2021
  
  3bab8250
- debug raw_gff3 · 017cb318
  khalid authored Oct 04, 2021
  
  017cb318
- debug raw_gff3 · b168a22f
  khalid authored Oct 04, 2021
  
  b168a22f
- debug raw_gff3 · 0b6405af
  khalid authored Oct 04, 2021
  
  0b6405af
- debug raw_gff3 · e7dd4dff
  khalid authored Oct 04, 2021
  
  e7dd4dff
- Add a gff3 raw reader · a18cc47b
  khalid authored Oct 04, 2021
  
  a18cc47b
- Change htseq-count name · 7a75426a
  khalid authored Oct 04, 2021
  
  7a75426a
- Change htseq-count name · b66322cb
  khalid authored Oct 04, 2021
  
  b66322cb
- typo in install htseq · 140f52b8
  khalid authored Oct 04, 2021
  
  140f52b8
- Add htseq-count · 506f0f69
  khalid authored Oct 04, 2021
  
  506f0f69
01 Oct, 2021 3 commits
- add a MBB logo to generated reports · 761fc5a5
  khalid authored Oct 01, 2021
  
  761fc5a5
- Add group coloration for marker depth signi plot · c8ce2421
  khalid authored Oct 01, 2021
  
  c8ce2421
- typos · cc3e82ed
  khalid authored Oct 01, 2021
  
  cc3e82ed
30 Sep, 2021 4 commits
- debug blastn · 90452403
  khalid authored Sep 30, 2021
  
  90452403
- typo in radseq_signi · 08bba848
  khalid authored Sep 30, 2021
  
  08bba848
- Add hisat2 · 1746e9d9
  khalid authored Sep 30, 2021
  
  1746e9d9
- Add hisat2 and significant fasta file output · 19976f85
  khalid authored Sep 30, 2021
  
  19976f85
28 Sep, 2021 2 commits
- Output a mapping result for significant markers · f29ee086
  khalid authored Sep 28, 2021
  
  f29ee086
- Output a mapping result for significant markers · 901d3819
  khalid authored Sep 28, 2021
  
  901d3819
27 Sep, 2021 1 commit
- Add signi. treshold to radsex tools · 7ab33d29
  khalid authored Sep 27, 2021
  
  7ab33d29
15 Sep, 2021 5 commits
- change pca varprop name · 924785ca
  khalid authored Sep 15, 2021
  
  924785ca
- change bcftools image name · 1b20c460
  khalid authored Sep 15, 2021
  
  1b20c460
- bcftools on vcfFile don't need a merging step · 155491eb
  khalid authored Sep 15, 2021
  
  155491eb
- bcftools on vcfFile don't need a merging step · e9a99b60
  khalid authored Sep 15, 2021
  
  e9a99b60
- Add bcftools stats for a vcfFile raw files · 859f1e3f
  khalid authored Sep 15, 2021
  
  859f1e3f
13 Sep, 2021 3 commits
- Add IBS analysis · 18be31b9
  khalid authored Sep 13, 2021
  
  18be31b9
- Use a SNP relate format before calling snpgdsIBDMLE · 0848081d
  khalid authored Sep 13, 2021
  
  0848081d
- temporary solution to https://github.com/zhengxwen/SeqArray/issues/73 · 86fed3ec
  khalid authored Sep 13, 2021
  
  86fed3ec
03 Sep, 2021 6 commits
- chnage Fst title · 1dc8d0e2
  khalid authored Sep 03, 2021
  
  1dc8d0e2
- add Relatedness calc · e8cceda8
  khalid authored Sep 03, 2021
  
  e8cceda8
- Deal with cases where there less than two pops for Fst · 61cc3b6b
  khalid authored Sep 03, 2021
  
  61cc3b6b
- Deal with cases where there less than two pops for Fst · d92cc784
  khalid authored Sep 03, 2021
  
  d92cc784
- Names for Fst rule · 67a9a8db
  khalid authored Sep 03, 2021
  
  67a9a8db
- Names for Fst rule · 77e8814b
  khalid authored Sep 03, 2021
  
  77e8814b
02 Sep, 2021 1 commit
- Add W&C pairwise Fst calculation · 053c3ad7
  khalid authored Sep 02, 2021
  
  053c3ad7