Commits · 39cecd253a7f3a7d2af47b633c2c5f51b1970e80 · mmassaviol / WAWmassaviol

09 Jan, 2020 5 commits
- Debug clade parameter · 39cecd25
  mmassaviol authored Jan 09, 2020
  
  39cecd25
- Update long_read_assembly (add raw_long_reads) · 0b96bd1a
  mmassaviol authored Jan 09, 2020
  
  0b96bd1a
- Update mitoz (add clade parameter to all tools) · a5097c0a
  mmassaviol authored Jan 09, 2020
  
  a5097c0a
- Update fastqc tool · e72b7a6a
  mmassaviol authored Jan 09, 2020
  
  e72b7a6a
- Remove get_samples and add raw_inputs system · 099ecf64
  mmassaviol authored Jan 09, 2020
  
  099ecf64
20 Dec, 2019 6 commits
- Update global rules · ba826f7b
  mmassaviol authored Dec 20, 2019
  
  ba826f7b
- Update cluster_config · 7e7be042
  mmassaviol authored Dec 20, 2019
  
  7e7be042
- Update edgeR and DESeq2 · b49e92f8
  mmassaviol authored Dec 20, 2019
  
  b49e92f8
- Update deploys scripts · 14147777
  mmassaviol authored Dec 20, 2019
  
  14147777
- Update dockerfiles · d09038e9
  mmassaviol authored Dec 20, 2019
```
separate install stage from file copying stage
```
  d09038e9
- Add docker_name to fit wapps and dockerhub names · 61d7289e
  mmassaviol authored Dec 20, 2019
  
  61d7289e
12 Dec, 2019 1 commit
- Debug (column names not present every time) · a668ab10
  mmassaviol authored Dec 12, 2019
  
  a668ab10
11 Dec, 2019 4 commits
- Merge branch 'master' of gitlab.mbb.univ-montp2.fr:mmassaviol/waw · a4818b47
  mmassaviol authored Dec 11, 2019
  
  a4818b47
- Debug mitoz_annotate (multiples fastqs) · 9889124c
  mmassaviol authored Dec 11, 2019
```
Debug circos (increase max_points_per_track)
```
  9889124c
- Improve cluster config · 0f73cc46
  mmassaviol authored Dec 11, 2019
  
  0f73cc46
- Debug dockerfile and add deploy scripts · 827b131a
  mmassaviol authored Dec 11, 2019
  
  827b131a
10 Dec, 2019 8 commits
- Removed submodule · 857e4790
  khalid authored Dec 10, 2019
  
  857e4790
- Removed submodule · 6f194626
  khalid authored Dec 10, 2019
  
  6f194626
- Removed submodule · e5fdcc9a
  khalid authored Dec 10, 2019
  
  e5fdcc9a
- Removed submodule · 6a9b5e31
  khalid authored Dec 10, 2019
  
  6a9b5e31
- added rnaseqde module · 9ad1fa2d
  khalid authored Dec 10, 2019
  
  9ad1fa2d
- added longreadsassembly module · 63d3afd9
  khalid authored Dec 10, 2019
  
  63d3afd9
- added radseqref module · 3272eaba
  khalid authored Dec 10, 2019
  
  3272eaba
- added radseqdenovo module · e1e91405
  khalid authored Dec 10, 2019
  
  e1e91405
06 Dec, 2019 8 commits
- Update local_config (add docker section) · 9af99264
  mmassaviol authored Dec 06, 2019
  
  9af99264
- Update, make pacbio_oxfordNanopore a global param · 0e87e36c
  mmassaviol authored Dec 06, 2019
  
  0e87e36c
- Update way to pass groups and update heatmap · 1204a1bd
  mmassaviol authored Dec 06, 2019
  
  1204a1bd
- Add copy_dir function · fb506e9b
  mmassaviol authored Dec 06, 2019
  
  fb506e9b
- Debug copying data files · 3934aaa0
  mmassaviol authored Dec 06, 2019
```
Add gitignore in scripts dir when empty (to create it on the repository)
```
  3934aaa0
- Add download config file button · ed317093
  mmassaviol authored Dec 06, 2019
  
  ed317093
- Add template docker · 5ffd1cba
  mmassaviol authored Dec 06, 2019
```
(from mbb_workflow_base in dockerhub)
```
  5ffd1cba
- Move Docker base file · ed199b82
  mmassaviol authored Dec 06, 2019
  
  ed199b82
04 Dec, 2019 5 commits
- Debug (copying data files twice) · cede6c55
  mmassaviol authored Dec 04, 2019
  
  cede6c55
- Debug install · 93f6567b
  mmassaviol authored Dec 04, 2019
  
  93f6567b
- Debug default value · 6d43fc37
  mmassaviol authored Dec 04, 2019
  
  6d43fc37
- Add missing R lib · fcf0c469
  mmassaviol authored Dec 04, 2019
  
  fcf0c469
- Circos install debug · 3110ceeb
  mmassaviol authored Dec 04, 2019
  
  3110ceeb
03 Dec, 2019 3 commits
- Debug DESeq2 (and improve heatmap) · 96436bb0
  mmassaviol authored Dec 03, 2019
  
  96436bb0
- Update to version 1.0.0 · 84f984c3
  mmassaviol authored Dec 03, 2019
  
  84f984c3
- Debug install line · 7d3b3d9a
  mmassaviol authored Dec 03, 2019
  
  7d3b3d9a