Commits · 4ad900d63ca243308af0cee6f1c80a3247517499 · mmassaviol / WAWmassaviol

06 Oct, 2021 1 commit
- EdgeR and deseq2 use an expandable input · 4ad900d6
  khalid authored Oct 06, 2021
  
  4ad900d6
04 Oct, 2021 1 commit
- Add a group_file inpput to edger and deseq2 · 56971a55
  khalid authored Oct 04, 2021
  
  56971a55
30 Sep, 2021 1 commit
- Add hisat2 · 1746e9d9
  khalid authored Sep 30, 2021
  
  1746e9d9
04 May, 2021 1 commit
- Add raw_index code · 38bbfb19
  khalid authored May 04, 2021
  
  38bbfb19
02 Mar, 2021 1 commit
- Change blast ftp site for download · 1496c850
  khalid authored Mar 02, 2021
  
  1496c850
22 Sep, 2020 1 commit
- Change bowtie2 command · 0376c3a9
  khalid authored Sep 22, 2020
  
  0376c3a9
21 Sep, 2020 2 commits
- Add RG · 77f90986
  mmassaviol authored Sep 21, 2020
  
  77f90986
- Merge · 555d0e48
  jlopez authored Sep 21, 2020
  
  555d0e48
17 Sep, 2020 2 commits
- Debug index path · 8d2a1380
  mmassaviol authored Sep 17, 2020
  
  8d2a1380
- Replace index path choosing by output_dir · 23846a2e
  mmassaviol authored Sep 17, 2020
  
  23846a2e
16 Sep, 2020 2 commits
- Separate indexing and mapping rules · 4710aea2
  mmassaviol authored Sep 16, 2020
  
  4710aea2
- Update mapping tools (indexes as inputs) · 3ee4a5b9
  mmassaviol authored Sep 16, 2020
  
  3ee4a5b9
10 Sep, 2020 1 commit
- Update input functions (separate SE PE) · b2e069c8
  mmassaviol authored Sep 10, 2020
  
  b2e069c8
04 Sep, 2020 1 commit
- Add a test to declare only SE or PE rules · 390a1536
  mmassaviol authored Sep 04, 2020
  
  390a1536
25 Aug, 2020 4 commits
- Add <step_name> to ruleorder · a95ed5bb
  mmassaviol authored Jun 16, 2020 and mmassaviol committed Aug 25, 2020
  
  a95ed5bb
- Change input functions · 6264df62
  mmassaviol authored Jun 05, 2020 and mmassaviol committed Aug 25, 2020
```
(prefix with step)
```
  6264df62
- Put <step_name> parameter · cb4dab48
  mmassaviol authored Jun 04, 2020 and mmassaviol committed Aug 25, 2020
```
to replace on workflow generation
```
  cb4dab48
- Put log path as a parameter · f2b8800b
  mmassaviol authored Jun 04, 2020 and mmassaviol committed Aug 25, 2020
  
  f2b8800b
16 Jul, 2020 4 commits
- Add <step_name> to ruleorder · 0a8371a6
  mmassaviol authored Jun 16, 2020 and mmassaviol committed Jul 16, 2020
  
  0a8371a6
- Change input functions · 2b38ffc1
  mmassaviol authored Jun 05, 2020 and mmassaviol committed Jul 16, 2020
```
(prefix with step)
```
  2b38ffc1
- Put <step_name> parameter · ece3cc0e
  mmassaviol authored Jun 04, 2020 and mmassaviol committed Jul 16, 2020
```
to replace on workflow generation
```
  ece3cc0e
- Put log path as a parameter · b586ca21
  mmassaviol authored Jun 04, 2020 and mmassaviol committed Jul 16, 2020
  
  b586ca21
06 Mar, 2020 1 commit
- Update bowtie2 · 46b7216b
  mmassaviol authored Mar 06, 2020
  
  46b7216b
11 Feb, 2020 1 commit
- Add bowtie2 tool · be2d4802
  mmassaviol authored Feb 11, 2020
  
  be2d4802