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mmassaviol
WAWmassaviol
Commits
cf84f6d11d0663e6cec93081ba8d29909ab3558b
Switch branch/tag
waw
08 Oct, 2021
1 commit
debug deseq2 R script
· cf84f6d1
khalid
authored
Oct 08, 2021
cf84f6d1
07 Oct, 2021
2 commits
debug deseq2
· 709cc54b
khalid
authored
Oct 07, 2021
709cc54b
Add GO and functional enrichment to edgeR
· 69d2a16c
khalid
authored
Oct 07, 2021
69d2a16c
06 Oct, 2021
5 commits
set DESeq2 script
· 9e373320
khalid
authored
Oct 06, 2021
9e373320
DESeq2 now output top40 genes without filtering
· 92e3f55c
khalid
authored
Oct 06, 2021
92e3f55c
DESeq2 now output top40 genes without filtering
· f0a81668
khalid
authored
Oct 06, 2021
f0a81668
EdgeR and deseq2 use an expandable input
· 1ed6822d
khalid
authored
Oct 06, 2021
1ed6822d
EdgeR and deseq2 use an expandable input
· 4ad900d6
khalid
authored
Oct 06, 2021
4ad900d6
04 Oct, 2021
13 commits
Add a group_file inpput to edger and deseq2
· 56971a55
khalid
authored
Oct 04, 2021
56971a55
Use htseq-count and hisat2 multiqc modules
· 1457d60f
khalid
authored
Oct 04, 2021
1457d60f
debug htseq-count
· c2680e81
khalid
authored
Oct 04, 2021
c2680e81
debug htseq-count
· 3bab8250
khalid
authored
Oct 04, 2021
3bab8250
debug raw_gff3
· 017cb318
khalid
authored
Oct 04, 2021
017cb318
debug raw_gff3
· b168a22f
khalid
authored
Oct 04, 2021
b168a22f
debug raw_gff3
· 0b6405af
khalid
authored
Oct 04, 2021
0b6405af
debug raw_gff3
· e7dd4dff
khalid
authored
Oct 04, 2021
e7dd4dff
Add a gff3 raw reader
· a18cc47b
khalid
authored
Oct 04, 2021
a18cc47b
Change htseq-count name
· 7a75426a
khalid
authored
Oct 04, 2021
7a75426a
Change htseq-count name
· b66322cb
khalid
authored
Oct 04, 2021
b66322cb
typo in install htseq
· 140f52b8
khalid
authored
Oct 04, 2021
140f52b8
Add htseq-count
· 506f0f69
khalid
authored
Oct 04, 2021
506f0f69
01 Oct, 2021
3 commits
add a MBB logo to generated reports
· 761fc5a5
khalid
authored
Oct 01, 2021
761fc5a5
Add group coloration for marker depth signi plot
· c8ce2421
khalid
authored
Oct 01, 2021
c8ce2421
typos
· cc3e82ed
khalid
authored
Oct 01, 2021
cc3e82ed
30 Sep, 2021
4 commits
debug blastn
· 90452403
khalid
authored
Sep 30, 2021
90452403
typo in radseq_signi
· 08bba848
khalid
authored
Sep 30, 2021
08bba848
Add hisat2
· 1746e9d9
khalid
authored
Sep 30, 2021
1746e9d9
Add hisat2 and significant fasta file output
· 19976f85
khalid
authored
Sep 30, 2021
19976f85
28 Sep, 2021
2 commits
Output a mapping result for significant markers
· f29ee086
khalid
authored
Sep 28, 2021
f29ee086
Output a mapping result for significant markers
· 901d3819
khalid
authored
Sep 28, 2021
901d3819
27 Sep, 2021
1 commit
Add signi. treshold to radsex tools
· 7ab33d29
khalid
authored
Sep 27, 2021
7ab33d29
15 Sep, 2021
5 commits
change pca varprop name
· 924785ca
khalid
authored
Sep 15, 2021
924785ca
change bcftools image name
· 1b20c460
khalid
authored
Sep 15, 2021
1b20c460
bcftools on vcfFile don't need a merging step
· 155491eb
khalid
authored
Sep 15, 2021
155491eb
bcftools on vcfFile don't need a merging step
· e9a99b60
khalid
authored
Sep 15, 2021
e9a99b60
Add bcftools stats for a vcfFile raw files
· 859f1e3f
khalid
authored
Sep 15, 2021
859f1e3f
13 Sep, 2021
3 commits
Add IBS analysis
· 18be31b9
khalid
authored
Sep 13, 2021
18be31b9
Use a SNP relate format before calling snpgdsIBDMLE
· 0848081d
khalid
authored
Sep 13, 2021
0848081d
temporary solution to
https://github.com/zhengxwen/SeqArray/issues/73
· 86fed3ec
khalid
authored
Sep 13, 2021
86fed3ec
03 Sep, 2021
1 commit
chnage Fst title
· 1dc8d0e2
khalid
authored
Sep 03, 2021
1dc8d0e2