GitLab

Addition of a sub-menu "References" under the main menu "Help".
Minor changes in the content of the "About" sub-meu.

The histogram plots for variables Y, CPUE, E and V that were only shown when using the expert-system are now directly available in a sub-menu of the main menu “Plots & graphs”.
Renaming of most of the "plots" in "graphs" in the interface and in the html files.

Moderate changes the decision tree related to the additive model & use of th Previous button & in messages

Continued improvement of the elimination of the question related to large fluctuation in abundance when overexploitation if there is no corresponding (additive) model available.
Improvement of plots titles.
Addition of a message about the use of the Previous button.
Addition of a message related to MSY & MSE graphs display.
Transformation from integer to boolean of the variables Flag_Modele_Lineaire_deja_recherche, Flag_Modele_Exponentiel_deja_recherche
Improvement of message contents related to the stop of the procedure according to R2 values.

Changes in different flies of the name of variable Global.effort_preponderant to Global.envir_preponderant to be consistent with earlier modification in the wording of the associated question.
Improvement of the content of model.txt and help files.
Addition of new test files .CLI.

The naming of the type of models is change with the use of Linear (Graham-Schaefer model)", "Exponential (Fox model)", "Generalized (Pella & Tomlinson model)",  and "Exponential_additive" for CPUE = f(E) and "Linear", "Exponential", "Power", "Power", "Non-monotonic"  for CPUE = f(V).
Addition of facts related to the model selection in the frame "Current known facts" when repeating the use of the sub-menu "Fit a model directly".
 Jackknife plots titles displayed on two lines.
Change in the title of the the sub-menu Make (or open) a history html folder, with addition of "& plots".

Addition of comment in java files. Cosmetic changes in the display of results.
Increase from 2 to 3 of the step between years label on time plots.
Display of variance result (was missing).

Automatic changes in xml and properties files

Improvement of the management of messages (in the code, no changes for the user). and addition of new output messages related to the results of the model fitting (MSY & MSE values and their confidene limits, visibility of the lines corresponding to fitted values for noteworthy values of V in the 3D graphs).
Management of the access to the MSY-MSY graphs in the "Plots" menu when they are not available (CPUE=f(V) and abnormal results on MSY & MSE values or width of the confidence intervals).
Improvement of the management of extremas of axes in the different plots.

Attribution of a number (#) to the different models and re-ordering. Please note that these numbers do not match the case numbers in Model.java.

Addition of 4 dataCLI for testing cases where the range of V values is <2 with or without max value < 100.
Cosmetic changes in the displayed texts of Cadre_Modele.java & Global.java
Improvement of the management of the number of decimals on X & Y axis of graphs; the decision is made only according to the range of values. This range is get from the statistical table in Data.stat when possible.
Addition in Modele.java of a message if the initial value of a parameter is equal to infinity.
Cosmetic changes in the contents of some Help files.

Addition of five models using the Ricker stock-recruitement equation to describe the function CPUE = f(V).
Addition of warning when the noteworthy values of MSY and/or MSE are negative or associated to extremely large confidence intervals.
Increase of the maximum number of iterations in the Marquardt algorithm (from 100 to 150).
Improvement of plots MSY = f(V) et MSE = f(V) with minimum value set to zero and prevention of plots when all values are negative.
Addition of the fitted curves on the plots CPUE = f(V) and Y = f(V).
Increase of the limit range of effort variation from 40% to 100%.
Increase of the range intervals of parameter c of the generalized model for shifting to the Fox or Graham-Schaefer model. Initially 0.8-1.2 and 1.8-2.2 respectively. Now 0.6-1.4 and 1.6 to 2.5 respectively.
Improvement of the answers when the software failled to find a convenient model (now more precise reason are provided).
Addition of warnings when contradiction are found between answers to different questions regarding the status of the stock and the results of the model regarding the level of exploitation.
Improvement of the caption on figures MSY = f(V) and MSE = f(E).

Addition or modification of data sets.
Cosmetic changes on displays and texts of models description.
Reorganization of the rules file.

Improvement of messages related to negative rule numbers ending the model selection process
"Production" changed into "Catches" including in the data .CLI files (old version still compatible ).
More detailled messages in case of invalid data file.
New data file for testing.
Modification of somo .help files.
Cosmetic changes in .TXT files.

Medium changes: Addition of 1) "Special Warning" regarding the use of the double-click; 2) Tabs-window for jackknife plots when small screen

Addition of a "Special Warning" regarding the use of the double-click
Addition of the display of a Tabs-window for jackknife plots when small screen, in addition to the single multi-graph windows.
Increase in the size of characters tables Statistics and Correlation and change in the title (Rank Correlation) of the latter table.
Additional removal of the double naming of the jackknife R² (Global.r_jk instead of Global.jackknife).
File Configuration.java deleted (no more used, replaced by code in CadreMain.java, lines starting from 918 private void readConfig().
Minor changes on the display of message text.

Rajout de la présentation des graphiques jackknife sous forme d'une fenêtre à onglets lors de validation du modèle si écran trop petit.
Rajout d'un fichier .CLI avec 11 années seulement pour test.
Suppression d'un doublon de nom du R² jackknife (Global.jackknife; maintenant uniquement Global .r_jk).
Corrections mineures (majuscules/mninuscules, espaces en trop, orthographe) des textes ou intitulés.
Elimination du fichier SAVE.HLP inutilisé.
Rajout mineur dans fichier VALIDE.HLP concernant p<0.05 de t jackknife si ordonnée à l'origine.

Same comment as previoulsly

Minor changes on the model text files used to describe them when a given model is declined with of without a constant term (intercept).

When a given model is declined with of without a constant term (intercept) the user is informed and suggestion to use one or the other model is provided.

Minor changes: Comment added when the answer "I don't know" is selected. Management of the titles of jpg files to exclude forbiden characters like > or <

When the answer "I don't know" is selected the user is informed either on the default action taken or on the fact that answering by Yes or No is compulsory.

Major changes: addition of t-test of Student on jackknife values of parameters, change in the criteria used for validation, comments on results tables regarding R²<0 and vhen all yearly jackknife values are > or < 100%.  Addition of BIC criteria

Plus minor changes (addition of comments in the script, change in format, etc.)

Changements moderes sur Validation & TexteRegles et affichage titres plots jackknife, mineurs ailleurs

Rajout R2 corrigé sur validation et affichage different R2 et test Fisher dans titres plots jackknife.
Age recrutement et début/fin influence environnement pas demandés si modèle catchability. Patch nécesssaire sur indexEnCours.
Parch sur RapportHtml pour résoudre pb des questions/réponses qui plantent système lorsque demandées.
Changement mineurs ailleurs.

Modification majeures: Inclusion test Fisher sur R2, rajout R2 et AIC corrigés, correction AIC, format scientifique résultats

 Inclusion test Fisher sur R2 avec tables de fisher.
Rajout R2 corrigé et AIC corrigé.
Correction AIC.
Format  scientifiue pour résultats chiffres trés grands ou très petits.
Changement mineurs sur titres ou entêtes

New warnings regarding consistency in ages.
Change display of 3-variate plots when CPUE = f(V) only.
Addition of comments

Minor changes on html issues.
File RapportHtml.java  minor changes related to variable bEnable[]
File WriteHtml.java comments.

Minor changes on Plot.java regarding the management of XY plots
Comments on UtilCadre.java

Major changes related to test of consistancy between answers reltated to age and renumbering of cases (decisions)

Major changes related to test of consistancy between answers reltated to age and renumbering of cases (decisions).
Declaration of new variables related to jackknife in Global.java

Addition of jackknife t-test for each parameter on the main panel of CLIMPROD (CadreMain).
Tests of answers consistancy regarding the different ages.
Warning related to time lags, degrees of freedom, statistical results.

Minor changes on java files (addition of comments or system print for test) and on help files.

Some of these changes are automated

5 fake files added

Major changes related to stock structure after the incorporation of the metatpopulation concept.

This reverts commit 028fdd80.

Arbre-decison.csv + TexteRegle.java + QuestionReponse.java: Reordering of the first questions.
QuestionReponse: Addition of a warning when the number of exploited year-classes is >8 (and reduction of the range of choice offered for this variable).

Changes in Global.java related to the previous comimit on stock-structure (metapopulation), + changes in the titles of the graphs (main and axes).
Addition of a Fake data file .CLI with 13 years of observation.

Cadre_ModeleDirect. Java:  Addition of a warning when the number of exploited year-classes is >8 (and reduction of the range of choice offered for this variable) consistent with QuestionReponse.java. Addition of error messages when there are inconstancies in the values of ages (begining, end of environmental influence, number of exploited year-classes).

Model.java: Addition of a warning when the number of df of the model is <10 (in addtion to <12). Changement mineurs de titres de graphiques (weighted, etc.) et rajout de commentaires.

These changes are mostly in relation with the previous commit regarding major changes on QuestionReponse.java regarding stock structure and the level of exploitation relative to MSY-MSE.

Major changes on Arbre_decision, QuestionReponse, TexteRegles, about stock structure and level of exploitation.

Major changes to incorporate new messages regarding the stock structure and the level of explotation relative to MSY-MSE. Introduction of the metapopulation concept. Elimination of a redondant questions regarding stock structure when chosing between linear (Schaefer) and exponential (Fox) models.
Minor changes: Comment.csv, comments into .java files, new CLI test file.

Rajout de fichiers d'examples, modifications de textes des graphiques, rajouts de commentaires dans les fichiers .java, rajouts flags ou message système).

This reverts commit fb51d7a8.

Addition d'une condition pour faire apparaitre le message "Your data set is not appropriate for this model (see statistical results in the'Current Known facts' table.)": ne peut apparaitre que si le numéro de question est >6. Sinon seul un message spécifique à la question est affiché.

Modification règles 3 et 56 au niveau du texte.

Rajout d'un message d'erreur si toutes les valeurs de CPUE sont <1. Plus modif cosmétiques de sauts de lignes avant { et }.

Rajout de sauts de lignes avant { et }.