GitLab

Addition of a third graph showing the relationship Observed CPUE vs CPUE Residual.

Improvement of transitional state estimation of V for models with effect on catchability or catchability and abundance.

Explanations on the answer to the questions on the beginning and end of V influence when it occurs before spawing.

For models with the influence of V on catchability only, the beginning and end of the effect was not taken into account when the model was fitted directly (only the number of year classes was asked). Now the age at recruitment is asked and the age at the beginning and end of V influence is deduced.

Correction of a recent bug in the HTML report (duplication of graphs on residual CPUE due to a bug in the name of the .jpg file after modification of the titles, now on two lines).

Addition of a column "Computed V" (averaged and lagged V value)  in the table of prediction.
Addition of data files Jurel Chile and logos FAO & IRD.

Adding FAO & IRD logos to Help->About
Climprod icon size reduced

When a new .CLI file is created, if a new line was incomplete it was impossible to save the file.

Addition of tabs in Help->Documentation for the Reference guide & Tutorial &changes in 2 HLP files.

In particular HLP and MODEL files

Changes of Climprod version name 5.2 & address for saving jar exe file in dist & also in CLIMPROD_INSTALL

Addition of data files Tunisia & Chile.
Cosmetic changes in texts of outputs.

Possibility of using input data desaggregated by semesters or less whan several recruitments per year.

Correction of time series display associated to the question  related to fishing effort stability.
Enlargement of the row height in the tables of new data manual entry and predictions.
Correction of the range of years (only used for setting the lable intervals on the X axis of time series).
Addition of the Climprod.jpg file in resources\images
Removal of special characters " and ' in the HLP files because incorrectly displayed.

Change of the name of the icon file.
Addition of transparency in the Getting started menu.

"beta" added to the Climprod name.
"s" removed in "Options" of the main menu.

Repeated question number (105) removed.

Cosmetic changes in the About sub-menu files and others. Addition of .CLI files

Correction of a bug of exclusion of MSY-MSE  graphs for models CPUE=f(V) and the additive exponential model.

Prevent a crash of the software when the user close the "Build a history html & graphs folder" windows without using it.

Changes in time plots X labels according to the length of the dataset.
Cosmetic changes in the decision tree (Arbre_decision.csv),  comment.csv & rules (regles.csv) texts with removal of unecessary spaces in the later file.
Cosmetic changes in the messages of the Validation.java file.

Addition of the CLIMPROD icon in the Copyright file of the sub-menu "About" in the "Help" menu.
Improvement of the icon

Addition of a sub-menu "Getting started" in the main menu "Help".
Addition of access to csv & txt data files in the main menu "Files".

Instruction added for the window "Current rule" that opens when the option "Trace all the procedure" is ticked.

Make it impossible to write with the keyboard in the frames related to the model fitting.

Addition of a sub-menu "References" under the main menu "Help".
Minor changes in the content of the "About" sub-meu.

The histogram plots for variables Y, CPUE, E and V that were only shown when using the expert-system are now directly available in a sub-menu of the main menu “Plots & graphs”.
Renaming of most of the "plots" in "graphs" in the interface and in the html files.

Moderate changes the decision tree related to the additive model & use of th Previous button & in messages

Continued improvement of the elimination of the question related to large fluctuation in abundance when overexploitation if there is no corresponding (additive) model available.
Improvement of plots titles.
Addition of a message about the use of the Previous button.
Addition of a message related to MSY & MSE graphs display.
Transformation from integer to boolean of the variables Flag_Modele_Lineaire_deja_recherche, Flag_Modele_Exponentiel_deja_recherche
Improvement of message contents related to the stop of the procedure according to R2 values.

Changes in different flies of the name of variable Global.effort_preponderant to Global.envir_preponderant to be consistent with earlier modification in the wording of the associated question.
Improvement of the content of model.txt and help files.
Addition of new test files .CLI.

The naming of the type of models is change with the use of Linear (Graham-Schaefer model)", "Exponential (Fox model)", "Generalized (Pella & Tomlinson model)",  and "Exponential_additive" for CPUE = f(E) and "Linear", "Exponential", "Power", "Power", "Non-monotonic"  for CPUE = f(V).
Addition of facts related to the model selection in the frame "Current known facts" when repeating the use of the sub-menu "Fit a model directly".
 Jackknife plots titles displayed on two lines.
Change in the title of the the sub-menu Make (or open) a history html folder, with addition of "& plots".

Addition of comment in java files. Cosmetic changes in the display of results.
Increase from 2 to 3 of the step between years label on time plots.
Display of variance result (was missing).

Automatic changes in xml and properties files

Improvement of the management of messages (in the code, no changes for the user). and addition of new output messages related to the results of the model fitting (MSY & MSE values and their confidene limits, visibility of the lines corresponding to fitted values for noteworthy values of V in the 3D graphs).
Management of the access to the MSY-MSY graphs in the "Plots" menu when they are not available (CPUE=f(V) and abnormal results on MSY & MSE values or width of the confidence intervals).
Improvement of the management of extremas of axes in the different plots.

Attribution of a number (#) to the different models and re-ordering. Please note that these numbers do not match the case numbers in Model.java.

Addition of 4 dataCLI for testing cases where the range of V values is <2 with or without max value < 100.
Cosmetic changes in the displayed texts of Cadre_Modele.java & Global.java
Improvement of the management of the number of decimals on X & Y axis of graphs; the decision is made only according to the range of values. This range is get from the statistical table in Data.stat when possible.
Addition in Modele.java of a message if the initial value of a parameter is equal to infinity.
Cosmetic changes in the contents of some Help files.

Addition of five models using the Ricker stock-recruitement equation to describe the function CPUE = f(V).
Addition of warning when the noteworthy values of MSY and/or MSE are negative or associated to extremely large confidence intervals.
Increase of the maximum number of iterations in the Marquardt algorithm (from 100 to 150).
Improvement of plots MSY = f(V) et MSE = f(V) with minimum value set to zero and prevention of plots when all values are negative.
Addition of the fitted curves on the plots CPUE = f(V) and Y = f(V).
Increase of the limit range of effort variation from 40% to 100%.
Increase of the range intervals of parameter c of the generalized model for shifting to the Fox or Graham-Schaefer model. Initially 0.8-1.2 and 1.8-2.2 respectively. Now 0.6-1.4 and 1.6 to 2.5 respectively.
Improvement of the answers when the software failled to find a convenient model (now more precise reason are provided).
Addition of warnings when contradiction are found between answers to different questions regarding the status of the stock and the results of the model regarding the level of exploitation.
Improvement of the caption on figures MSY = f(V) and MSE = f(E).

Addition or modification of data sets.
Cosmetic changes on displays and texts of models description.
Reorganization of the rules file.

Improvement of messages related to negative rule numbers ending the model selection process
"Production" changed into "Catches" including in the data .CLI files (old version still compatible ).
More detailled messages in case of invalid data file.
New data file for testing.
Modification of somo .help files.
Cosmetic changes in .TXT files.