habitat

00-scripts/habitat.R

@@ -32,9 +32,9 @@ coordinates(latlon) = c("lon", "lat")
 proj4string(latlon) = CRS("+init=epsg:4326")
 
 ## load raster of "substrate"
-rp=raster("01-infos/EUSeaMap2016_substrate_raster_med_res200m.tif")
+rp=raster("01-infos/habitat/EUSeaMap2016_substrate_raster_med_res200m.tif")
 #correspondance ID/levels(Substrate)
-levels.substrate=as.character(read.table("01-infos/EUSeaMap2016_substrate_levels_med_res200m.tsv",sep="\t")$V1)
+levels.substrate=as.character(read.table("01-infos/habitat/EUSeaMap2016_substrate_levels_med_res200m.tsv",sep="\t")$V1)
 ##convertir les lat/lon dans la projection du raster "rp"
 latlon = spTransform(latlon,proj4string(rp))
 

README.md

@@ -63,8 +63,8 @@ To access to our private server, please follow these instructions
 Now you are connected to our server and you can download the required files. They are stored into : /DataEnvironment/resources
 
 Download the content of /DataEnvironment/resources and copy it into the folder [01-infos](01-infos). Your data should be stored this way :
-* 01-infos/EUSeaMap2016_substrate_levels_med_res200m.tsv
-* 01-infos/EUSeaMap2016_substrate_levels_med_res200m.tif
+* 01-infos/habitat/EUSeaMap2016_substrate_levels_med_res200m.tsv
+* 01-infos/habitat/EUSeaMap2016_substrate_levels_med_res200m.tif
 * 01-infos/chlorophyll/benthic/Present.Benthic.Mean.Depth.Chlorophyll.Max.tif.zip
 * 01-infos/chlorophyll/benthic/Present.Benthic.Mean.Depth.Chlorophyll.Mean.tif.zip
 * 01-infos/chlorophyll/benthic/Present.Benthic.Mean.Depth.Chlorophyll.Min.tif.zip