Commit 1fef3abd authored by peguerin's avatar peguerin
Browse files

readme update

parent 207017a8
......@@ -148,7 +148,7 @@ _Mullus surmuletus_ | Platanus | MBB | Paired-end 35
_Mullus surmuletus_ | Platanus | MESO@LR | Paired-end 350bp & 550bp insert size Mate-pair 3Kbp & 5Kbp insert size | 3146055 | 384 | 613 | 2940 | 488370 | 74X
_Mullus surmuletus_ | Abyss2 | MBB | Paired-end 350bp & 550bp insert size Mate-pair 3Kbp & 5Kbp insert size | 36011115 | 96 | 686 | 4938 | 17739 | 66X
_Serranus cabrilla_ | Platanus | MBB | Paired-end 350bp & 550bp insert size Mate-pair 3Kbp & 5Kbp insert size | 2169385 | 1135 | 627 | 2190 | 613541 | 63X
_Serranus cabrilla_ | `Supernova` | Both | `Chromium Linked-reads` | NA | NA | `223` | `4951` | `67074` | 48X
_Serranus cabrilla_ | `Supernova` | Both | `Chromium Linked-reads` | NA | NA | `223` | `4951` | `67074` | `96X`;75X
_Serranus cabrilla_ | ARCS | MBB | Both | NA | NA | 627 | 2122 | 624679 | 63X
......@@ -162,5 +162,5 @@ _Serranus cabrilla_ | ARCS | MBB | Both
- Contig N50 : size of the contigs from which contigs which are larger represents half of the total genome size
- Number of scaffolds : number of set of linked-contigs
- Scaffold N50 : size of the scaffold from which scaffolds which are larger represents half of the total genome size
- Coverage : defined as C = L x N / G with C the coverage, L the length of a read, N the number of reads, G the total genome size
- Coverage : defined as C = L x N / G with C the coverage, L the length of a read, N the number of reads, G the total genome size. For `Supernova` assembler we give coverage with raw NGS data and coverage with threshold of maximum number of reads allowed by the program to perform assembly.
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