Commit 25961a2b authored by peguerin's avatar peguerin
Browse files

readme update

parent ff3cdabd
......@@ -26,7 +26,7 @@ We aims to assemble 3 _de novo_ draft genomes of one invididual of 3 different s
- _Serranus cabrilla_ as `serran`
The three draft genomes were sequenced within the NGS technology.
The three draft genomes were sequenced using NGS technologies.
### paired-end
......@@ -128,14 +128,17 @@ Scaffolding genome sequence assemblies using 10X Genomics Chromium data. In othe
see [arcs_pipeline.sh](arcs/pipeline.sh) for details.
## Measuring the assembly
## Measuring genome assemblies
```
bash measuring/genome_assembly_fasta_summarize.sh genome_assembly.fasta
```
# Results
## Summary statistics of genome assemblies
_CSV file of this table is available [here](results/resultats_assemblage_genome-1.csv)_
_CSV file of this table is available_ [here](results/resultats_assemblage_genome-1.csv)
Species | Genome assembler | Computing platform | Library | # of contigs | Contig N50 | Total size(Mbp) | # of scaffolds | Scaffold N50 | Coverage
--------------------|--------------------|----------------------|--------------------------------------------------------------------------|----------------|--------------|--------------------|------------------|----------------|----------
......
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