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reservebenefit
genome_assemblies_collection
Commits
25961a2b
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25961a2b
authored
Jun 25, 2019
by
peguerin
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readme update
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README.md
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@@ -26,7 +26,7 @@ We aims to assemble 3 _de novo_ draft genomes of one invididual of 3 different s
-
_Serranus cabrilla_ as
`serran`
The three draft genomes were sequenced
within the
NGS technolog
y
.
The three draft genomes were sequenced
using
NGS technolog
ies
.
### paired-end
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@@ -128,14 +128,17 @@ Scaffolding genome sequence assemblies using 10X Genomics Chromium data. In othe
see
[
arcs_pipeline.sh
](
arcs/pipeline.sh
)
for details.
## Measuring
th
e assembl
y
## Measuring
genom
e assembl
ies
```
bash measuring/genome_assembly_fasta_summarize.sh genome_assembly.fasta
```
# Results
## Summary statistics of genome assemblies
_CSV file of this table is available [here](results/resultats_
assemblage_genome-1.csv)
_
_CSV file of this table is available
_
[
here
](
results/resultats_assemblage_genome-1.csv
)
Species | Genome assembler | Computing platform | Library | # of contigs | Contig N50 | Total size(Mbp) | # of scaffolds | Scaffold N50 | Coverage
--------------------|--------------------|----------------------|--------------------------------------------------------------------------|----------------|--------------|--------------------|------------------|----------------|----------
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