Commit 6548c501 authored by peguerin's avatar peguerin
Browse files

second try supernova

parent d20482e8
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## serranus cabrilla
## metrics serran supernova assembly
quast.py --min-contig 4000 --eukaryote --circos --output-dir metrics/serran/supernova \
/donnees/RESERVEBENEFIT/whole_genome_assembly/assemblage_serran/mbb/chromium/serranus.1.fasta \
/donnees/RESERVEBENEFIT/whole_genome_assembly/assemblage_serran/mbb/chromium/serranus.2.fasta
## metrics serran supernova assembly first try
quast.py --min-contig 4000 --eukaryote --circos --output-dir metrics/serran/supernova_try1 \
/donnees/RESERVEBENEFIT/whole_genome_assembly/assemblage_serran/mbb/chromium/try_1/serranus.1.fasta \
/donnees/RESERVEBENEFIT/whole_genome_assembly/assemblage_serran/mbb/chromium/try_1/serranus.2.fasta
## metrics serran supernova assembly second try
quast.py --min-contig 4000 --eukaryote --circos --output-dir metrics/serran/supernova_try2 \
/donnees/RESERVEBENEFIT/whole_genome_assembly/assemblage_serran/mbb/chromium/try_2/serranus2.1.fasta \
/donnees/RESERVEBENEFIT/whole_genome_assembly/assemblage_serran/mbb/chromium/try_2/serranus2.2.fasta
## metrics serran platanus assembly
quast.py --min-contig 4000 --eukaryote --circos --output-dir metrics/serran/platanus \
/donnees/RESERVEBENEFIT/whole_genome_assembly/assemblage_serran/mbb/platanus/assemblies/serran_mbb_gapClosed.fa
## metrics serran ARCS assembly
quast.py --min-contig 4000 --eukaryote --circos --output-dir metrics/serran/arcs \
/home/pguerin/working/draft_genome_assembly/serran_arcs/improved_serran.fasta
......
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