Commit 9dbabac9 authored by peguerin's avatar peguerin
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table results

parent e444fb05
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# Results
Species | Genome assembler | Computing platform | Library | # of contigs | Contig N50 | Total size(Mbp) | # of scaffolds | Scaffold N50 | Coverage
-------------------|--------------------|----------------------|--------------------------------------------------------------------------|----------------|--------------|--------------------|------------------|----------------|----------
Diplodus sargus | Platanus | MBB | Paired-end 350bp & 550bp insert size Mate-pair 3Kbp & 5Kbp insert size | 3030501 | 991 | 856 | 4227 | 2660334 | 53X
Diplodus sargus | Platanus | MESO@LR | Paired-end 350bp & 550bp insert size Mate-pair 3Kbp & 5Kbp insert size | 2408078 | 1101 | 785 | 2344 | 3371708 | 57X
Mullus surmuletus | Platanus | MBB | Paired-end 350bp & 550bp insert size Mate-pair 3Kbp & 5Kbp insert size | 3616310 | 344 | 653 | 5417 | 192808 | 69X
Mullus surmuletus | Platanus | MESO@LR | Paired-end 350bp & 550bp insert size Mate-pair 3Kbp & 5Kbp insert size | 3146055 | 384 | 613 | 2940 | 488370 | 74X
Mullus surmuletus | Abyss2 | MBB | Paired-end 350bp & 550bp insert size Mate-pair 3Kbp & 5Kbp insert size | 36011115 | 96 | 686 | 4938 | 17739 | 66X
Serranus cabrilla | Platanus | MBB | Paired-end 350bp & 550bp insert size Mate-pair 3Kbp & 5Kbp insert size | 2169385 | 1135 | 627 | 2190 | 613541 | 63X
Serranus cabrilla | Supernova | MESO@LR | Chromium Linked-reads | NA | NA | 223 * | 4951 * | 67074 * | :question:
Serranus cabrilla | ARCS | MBB | Both | NA | NA | 627 | 2122 | 624679 | 63X
Species | Genome assembler | Computing platform | Library | # of contigs | Contig N50 | Total size(Mbp) | # of scaffolds | Scaffold N50 | Coverage
--------------------|--------------------|----------------------|--------------------------------------------------------------------------|----------------|--------------|--------------------|------------------|----------------|----------
_Diplodus sargus_ | Platanus | MBB | Paired-end 350bp & 550bp insert size Mate-pair 3Kbp & 5Kbp insert size | 3030501 | 991 | 856 | 4227 | 2660334 | 53X
_Diplodus sargus_ | Platanus | MESO@LR | Paired-end 350bp & 550bp insert size Mate-pair 3Kbp & 5Kbp insert size | 2408078 | 1101 | 785 | 2344 | 3371708 | 57X
_Mullus surmuletus_ | Platanus | MBB | Paired-end 350bp & 550bp insert size Mate-pair 3Kbp & 5Kbp insert size | 3616310 | 344 | 653 | 5417 | 192808 | 69X
_Mullus surmuletus_ | Platanus | MESO@LR | Paired-end 350bp & 550bp insert size Mate-pair 3Kbp & 5Kbp insert size | 3146055 | 384 | 613 | 2940 | 488370 | 74X
_Mullus surmuletus_ | Abyss2 | MBB | Paired-end 350bp & 550bp insert size Mate-pair 3Kbp & 5Kbp insert size | 36011115 | 96 | 686 | 4938 | 17739 | 66X
_Serranus cabrilla_ | Platanus | MBB | Paired-end 350bp & 550bp insert size Mate-pair 3Kbp & 5Kbp insert size | 2169385 | 1135 | 627 | 2190 | 613541 | 63X
_Serranus cabrilla_ | Supernova | MESO@LR | Chromium Linked-reads | NA | NA | 223 * | 4951 * | 67074 * | :question:
_Serranus cabrilla_ | ARCS | MBB | Both | NA | NA | 627 | 2122 | 624679 | 63X
- Species : the species of the organism we sequenced
- Genome assembler : the software/workflow we used to perform genome assembly
- Computing platform : The high performance platform we used to perform genome assembly [MBB](https://mbb.univ-montp2.fr/MBB/index.php) is 64 cores and 512Go RAM and [MESO@LR](https://meso-lr.umontpellier.fr/) is 80 cores and 1To Ram
- Library : see [description](#-description)
- Library : see [data description](#-data-files)
- Number of contigs : number of set of overlapping DNA segments
- Contig N50 : size of the contigs from which contigs which are larger represents half of the total genome size
- Number of scaffolds : number of set of linked-contigs
......
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