Commit c03f58db authored by peguerin's avatar peguerin
Browse files

readme update

parent 7df97572
......@@ -108,10 +108,10 @@ platanus gap_close -t 64 -tmp temp/ -o serran_hpc_gapclose -c out_scaffold.fa -
## Supernova
Supernova should be run using 38-56x coverage of the genome.
- Somewhat higher coverage is sometimes advantageous.
- Supernova will exit if it finds that coverage is far from the recommended range.
- Note that at most 2.14 billion reads are allowed.
- Please note that we have not extensively tested genomes larger than human, and any genome above approximately 4 GB should be considered experimental and is not supported.
- Somewhat higher coverage is sometimes advantageous.
- Supernova will exit if it finds that coverage is far from the recommended range.
- Note that at most 2.14 billion reads are allowed.
- Please note that we have not extensively tested genomes larger than human, and any genome above approximately 4 GB should be considered experimental and is not supported.
### 1. De novo assembly
......@@ -145,7 +145,7 @@ see [arcs_pipeline.sh](arcs/pipeline.sh) for details.
bash measuring/genome_assembly_fasta_summarize.sh genome_assembly.fasta
```
Alternatively we get metrics with [quast.py](https://github.com/ablab/quast) :
Alternatively we produce metrics with [quast.py](https://github.com/ablab/quast) :
```
bash measuring/quast.sh
......
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