Commit cad30fdd authored by peguerin's avatar peguerin
Browse files

readme update

parent 810c97ff
......@@ -4,6 +4,9 @@
A collection of commands to assemble genome from NGS data.
# Data files
NGS data are stored
main folder
......@@ -23,5 +26,37 @@ main folder
- Lib_10_S1_L002_R2_001.fastq
## Prerequisites
* [platanus 1.2.4](http://platanus.bio.titech.ac.jp/)
* [supernova 2.1.1](https://support.10xgenomics.com/de-novo-assembly/software/downloads/latest)
* [longranger 2.2.2](https://support.10xgenomics.com/genome-exome/software/pipelines/latest/what-is-long-ranger)
* [arcs](https://github.com/bcgsc/arcs) please follow instruction into [install.sh](arcs/install.sh)
# Genome assembly methods
## Platanus
### assemble contig
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### scaffoling
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### gapclose
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## Superstar
## Arcs
# Results
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