Commit f21c9b7a authored by peguerin's avatar peguerin
Browse files

readme update

parent 447e2f5a
......@@ -15,6 +15,8 @@ A collection of commands to assemble genome from NGS data.
* [arcs](https://github.com/bcgsc/arcs) please follow instruction into [install.sh](arcs/install.sh)
* _(optionnal)_ [quast.py](https://github.com/ablab/quast)
# Data files
## Description
......@@ -143,6 +145,12 @@ see [arcs_pipeline.sh](arcs/pipeline.sh) for details.
bash measuring/genome_assembly_fasta_summarize.sh genome_assembly.fasta
```
Alternatively we get metrics with [quast.py](https://github.com/ablab/quast) :
```
bash measuring/quast.sh
```
Results are store into [metrics](measuring/metrics)
# Results
......
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