Commit 4573db1c authored by peguerin's avatar peguerin
Browse files

Update README.md

parent 7244d170
......@@ -43,6 +43,7 @@ snakemake --version
- [STACKS 2.0b](http://catchenlab.life.illinois.edu/stacks/)
* Check version and if programs are correctly installed by typing :
```
process_radtags --version
clone_filter --version
......@@ -54,6 +55,7 @@ populations --version
- [BWA 0.7.17](https://icb.med.cornell.edu/wiki/index.php/Elementolab/BWA_tutorial)
* Download `bwa` at: http://sourceforge.net/projects/bio-bwa/files/
```
tar -xvf bwa-x.x.x.tar.bz2
cd bwa-x.x.x
......@@ -62,6 +64,7 @@ make
make install
```
* Check version and if programs are correctly installed by typing :
```
bwa
## should give you the output
......@@ -72,6 +75,7 @@ Version: 0.7.17-r1188
- [SAMTOOLS 1.9 ](http://www.htslib.org/)
* Download `htslib` and `samtools` at : http://www.htslib.org/download/
* Building each desired package from source is very simple:
```
cd htslib-1.x
./configure --prefix=/where/to/install
......@@ -85,6 +89,7 @@ make
make install
```
* Check version and if programs are correctly installed by typing :
```
samtools --version
## should give you the output
......
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