Commit 7244d170 authored by peguerin's avatar peguerin
Browse files

Update README.md

parent 46aa3884
......@@ -34,7 +34,7 @@ blablabla
You must install the following softwares and packages :
- [SNAKEMAKE 5.3.0](https://snakemake.readthedocs.io/en/stable/getting_started/installation.html)
Check version and if the program is correctly installed by typing :
* Check version and if the program is correctly installed by typing :
```
snakemake --version
## should give you the output
......@@ -42,7 +42,7 @@ snakemake --version
```
- [STACKS 2.0b](http://catchenlab.life.illinois.edu/stacks/)
Check version and if programs are correctly installed by typing :
* Check version and if programs are correctly installed by typing :
```
process_radtags --version
clone_filter --version
......@@ -53,7 +53,7 @@ populations --version
```
- [BWA 0.7.17](https://icb.med.cornell.edu/wiki/index.php/Elementolab/BWA_tutorial)
Download `bwa` at: http://sourceforge.net/projects/bio-bwa/files/
* Download `bwa` at: http://sourceforge.net/projects/bio-bwa/files/
```
tar -xvf bwa-x.x.x.tar.bz2
cd bwa-x.x.x
......@@ -61,7 +61,7 @@ cd bwa-x.x.x
make
make install
```
Check version and if programs are correctly installed by typing :
* Check version and if programs are correctly installed by typing :
```
bwa
## should give you the output
......@@ -69,9 +69,9 @@ Program: bwa (alignment via Burrows-Wheeler transformation)
Version: 0.7.17-r1188
...
```
- [SAMTOOLS](http://www.htslib.org/)
Download `htslib` and `samtools` at : http://www.htslib.org/download/
Building each desired package from source is very simple:
- [SAMTOOLS 1.9 ](http://www.htslib.org/)
* Download `htslib` and `samtools` at : http://www.htslib.org/download/
* Building each desired package from source is very simple:
```
cd htslib-1.x
./configure --prefix=/where/to/install
......@@ -84,7 +84,7 @@ cd samtools-1.x
make
make install
```
Check version and if programs are correctly installed by typing :
* Check version and if programs are correctly installed by typing :
```
samtools --version
## should give you the output
......
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