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reservebenefit
snakemake_stacks2
Commits
7a51b5c0
Commit
7a51b5c0
authored
Oct 24, 2018
by
peguerin
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Update README.md
parent
4573db1c
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@@ -35,6 +35,7 @@ You must install the following softwares and packages :
-
[
SNAKEMAKE 5.3.0
](
https://snakemake.readthedocs.io/en/stable/getting_started/installation.html
)
*
Check version and if the program is correctly installed by typing :
```
snakemake --version
## should give you the output
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@@ -76,19 +77,19 @@ Version: 0.7.17-r1188
*
Download
`htslib`
and
`samtools`
at : http://www.htslib.org/download/
*
Building each desired package from source is very simple:
```
cd htslib-1.x
./configure --prefix=/where/to/install
make
make install
cd ..
## and similarly for samtools :
cd samtools-1.x
./configure --prefix=/where/to/install
make
make install
```
*
Check version and if programs are correctly installed by typing :
```
cd htslib-1.x
./configure --prefix=/where/to/install
make
make install
cd ..
## and similarly for samtools :
cd samtools-1.x
./configure --prefix=/where/to/install
make
make install
```
* Check version and if programs are correctly installed by typing :
```
samtools --version
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