Commit 7a51b5c0 authored by peguerin's avatar peguerin
Browse files

Update README.md

parent 4573db1c
......@@ -35,6 +35,7 @@ You must install the following softwares and packages :
- [SNAKEMAKE 5.3.0](https://snakemake.readthedocs.io/en/stable/getting_started/installation.html)
* Check version and if the program is correctly installed by typing :
```
snakemake --version
## should give you the output
......@@ -76,19 +77,19 @@ Version: 0.7.17-r1188
* Download `htslib` and `samtools` at : http://www.htslib.org/download/
* Building each desired package from source is very simple:
```
cd htslib-1.x
./configure --prefix=/where/to/install
make
make install
cd ..
## and similarly for samtools :
cd samtools-1.x
./configure --prefix=/where/to/install
make
make install
```
* Check version and if programs are correctly installed by typing :
```
cd htslib-1.x
./configure --prefix=/where/to/install
make
make install
cd ..
## and similarly for samtools :
cd samtools-1.x
./configure --prefix=/where/to/install
make
make install
```
* Check version and if programs are correctly installed by typing :
```
samtools --version
......
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