Commit 7aabb5ba authored by peguerin's avatar peguerin
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Update README.md

parent 24a0423e
......@@ -121,22 +121,27 @@ verbose as possible — e.g. include the command line, etc
* `bash ./00-scripts/step1/filter_raw_data.sh`
## 5.2 Georeferenced sequences alignments by species
* `bash ./00-scripts/step2/seq_alnt_filtered_data.sh `
* `mkdir ./06-species_alnt_cluster/total`
* `mkdir ./06-species_alnt_cluster/freshwater`
* `mkdir ./06-species_alnt_cluster/marine`
* `bash ./00-scripts/step2/cluster_freshwater_vs_marine.sh`
* `Rscript ./00-scripts/step2/equalareacoords.R`
```
bash ./00-scripts/step2/seq_alnt_filtered_data.sh
mkdir ./06-species_alnt_cluster/total
mkdir ./06-species_alnt_cluster/freshwater
mkdir ./06-species_alnt_cluster/marine
bash ./00-scripts/step2/cluster_freshwater_vs_marine.sh
Rscript ./00-scripts/step2/equalareacoords.R
```
## 5.3 Species sequence pairwise comparison
* `julia ./00-scripts/step3/master_matrices.jl`
```
julia ./00-scripts/step3/master_matrices.jl
```
## 5.4 Genetic Diversity calculation
* `julia ./00-scripts/step4/equalarea_numbers.jl`
* `bash ./00-scripts/step4/gdval_by_site.sh`
* `julia ./00-scripts/step4/metrics_by_area_and_species.jl`
```
julia ./00-scripts/step4/equalarea_numbers.jl
bash ./00-scripts/step4/gdval_by_site.sh
julia ./00-scripts/step4/metrics_by_area_and_species.jl
```
## 5.5 Statistical analysis
* `Rscript ./00-scripts/step5/descripteurs.R`
* `Rscript ./00-scripts/step5/figures.R`
```
Rscript ./00-scripts/step5/descripteurs.R
Rscript ./00-scripts/step5/figures.R
```
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