Commit b49b461b authored by peguerin's avatar peguerin
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Update README.md

parent 8ea50b0a
......@@ -51,9 +51,9 @@ The included data files are :
* `02-raw_data/seqbold_data.txt` : Georeferenced sequences of individuals from the supergroup "actinopterygii" have been downloaded from [http://www.boldsystems.org/index.php/Public_SearchTerms?taxon=&searchMenu=records&query=actinopterygii]
* `01-infos/grid_equalarea200km` : Shapefile of worldmap equal area projection epsg:4326 with nested equal area grids (cell sizes of 200km)
* `01-infos/ne_110m_land` : Shapefile of worldcoast from [http://www.naturalearthdata.com]
* `01-infos/ne_110m_land` : Shapefile of worldcoast from (http://www.naturalearthdata.com)
* `01-infos/equalarea_id_coords.tsv` : ID and left/right/top/bottom coordinates of each equal area into the shapefile grid_equalarea200km.
* `01-infos/marine_actinopterygii_species.txt` : List of "actinopterygii" saltwater species according to [http://www.fishbase.org/]
* `01-infos/marine_actinopterygii_species.txt` : List of "actinopterygii" saltwater species according to (http://www.fishbase.org/)
* `01-infos/freshwater_behrman_worldcoast_data_object.RData`: R spatial object from "sp package" which is an equal area grid in Berhmann projection with worldcoast shape and presence/absence of freshwater fish species from [https://www.iucn.org/]
* `01-infos/marine_behrman_worldcoast_data_object.RData` : ... of marine fish species.
* IL EN MANQUE...
......@@ -77,7 +77,7 @@ You're ready to run the analysis. Now follow the instructions at [Running the pi
- BASH scripts
* [filter_raw_data.sh](00-scripts/step1/filter_raw_data.sh) : Keep only the CO1 sequences with lat/lon information
* [get_geonames_coordinates.sh](00-scripts/step1/get_geonames_coordinates.sh) : Uses [http://www.geonames.org/] to find missing coordinates of individual sequences from their textual information of location.
* [get_geonames_coordinates.sh](00-scripts/step1/get_geonames_coordinates.sh) : Uses (http://www.geonames.org/) to find missing coordinates of individual sequences from their textual information of location.
- PYTHON scripts
* [lat_long_DMS_DD_converter.py](00-scripts/step1/lat_long_DMS_DD_converter.py) : Converts from DMS format to DD format the given coordinates.
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