Commit e38ef728 authored by peguerin's avatar peguerin
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Update README.md

parent b49b461b
...@@ -54,7 +54,7 @@ The included data files are : ...@@ -54,7 +54,7 @@ The included data files are :
* `01-infos/ne_110m_land` : Shapefile of worldcoast from (http://www.naturalearthdata.com) * `01-infos/ne_110m_land` : Shapefile of worldcoast from (http://www.naturalearthdata.com)
* `01-infos/equalarea_id_coords.tsv` : ID and left/right/top/bottom coordinates of each equal area into the shapefile grid_equalarea200km. * `01-infos/equalarea_id_coords.tsv` : ID and left/right/top/bottom coordinates of each equal area into the shapefile grid_equalarea200km.
* `01-infos/marine_actinopterygii_species.txt` : List of "actinopterygii" saltwater species according to (http://www.fishbase.org/) * `01-infos/marine_actinopterygii_species.txt` : List of "actinopterygii" saltwater species according to (http://www.fishbase.org/)
* `01-infos/freshwater_behrman_worldcoast_data_object.RData`: R spatial object from "sp package" which is an equal area grid in Berhmann projection with worldcoast shape and presence/absence of freshwater fish species from [https://www.iucn.org/] * `01-infos/freshwater_behrman_worldcoast_data_object.RData`: R spatial object from "sp package" which is an equal area grid in Berhmann projection with worldcoast shape and presence/absence of freshwater fish species from (https://www.iucn.org/)
* `01-infos/marine_behrman_worldcoast_data_object.RData` : ... of marine fish species. * `01-infos/marine_behrman_worldcoast_data_object.RData` : ... of marine fish species.
* IL EN MANQUE... * IL EN MANQUE...
...@@ -66,7 +66,7 @@ git clone http://gitlab.mbb.univ-montp2.fr/reservebenefit/worldmap_fish_genetic_ ...@@ -66,7 +66,7 @@ git clone http://gitlab.mbb.univ-montp2.fr/reservebenefit/worldmap_fish_genetic_
cd worldmap_fish_genetic_diversity cd worldmap_fish_genetic_diversity
``` ```
Then you will need to download georeferenced sequences of actinopterygii individuals "combined TSV file" from [http://www.boldsystems.org/index.php/Public_SearchTerms?taxon=&searchMenu=records&query=actinopterygii] Then you will need to download georeferenced sequences of actinopterygii individuals "combined TSV file" from (http://www.boldsystems.org/index.php/Public_SearchTerms?taxon=&searchMenu=records&query=actinopterygii)
Store it into the folder `02-raw_data` and rename it `seqbold_data.txt` Store it into the folder `02-raw_data` and rename it `seqbold_data.txt`
You're ready to run the analysis. Now follow the instructions at [Running the pipeline](#5-running-the-pipeline) You're ready to run the analysis. Now follow the instructions at [Running the pipeline](#5-running-the-pipeline)
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