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seaconnect
annotationVariant
Commits
17cd06f2
Commit
17cd06f2
authored
Mar 05, 2021
by
peguerin
Browse files
fix header vcf
parent
fb3afbef
Changes
1
Hide whitespace changes
Inline
Side-by-side
locate_coding_snps.sh
View file @
17cd06f2
...
...
@@ -10,7 +10,7 @@ intersect_vcf_annotation () {
bedtools intersect
-wb
-a
$2
-b
$3
|
grep
$4
| rev |
cut
-f10-
| rev |
uniq
>
$1_$4
.bed
wait
;
cat
<
(
head
$2
)
$1_$4
.bed
>
$1_$4
.vcf
cat
<
(
grep
"^#"
$2
)
$1_$4
.bed
>
$1_$4
.vcf
}
# diplodus sargus
...
...
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