Commit bc6da528 authored by peguerin's avatar peguerin
Browse files

flanking sequences varpos

parent 2af059f1
## get flanking sequences centered on SNP genome coordinates
for i in `echo diplodus mullus`;
do anvage flank -f ${i}_CDS.vcf -g genomes/${i}_genome_lgt6000.fasta -w 200 -o ${i}_CDS;
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