Commit d5aa5c6d authored by peguerin's avatar peguerin
Browse files

how to make a database blast

parent 3fbcda43
##wget ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/complete/uniprot_sprot.fasta.gz
wget ftp://ftp.ebi.ac.uk/pub/databases/fastafiles/uniprot/uniprotkb_swissprot.gz
zcat uniprotkb_swissprot.gz | awk '{if (/^>/) { print ">" $2} else { print $_}}' > swissprot.fa
gunzip uniprotkb_swissprot.gz
makeblastdb -in swissprot.fa -out swissprot_nucl -dbtype prot
\ No newline at end of file
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