Commit 0f69df6d authored by peguerin's avatar peguerin
Browse files

remove indel script sh

parent 088ca0a2
## remove INDEL variants from raw dDocent's output VCF file
SPECIES=$1
singularity exec seaconnect.simg vcftools --vcf 04-ddocent/"${SPECIES}"/TotalRawSNPs.vcf --remove-indels --recode --recode-INFO-all --out 05-vcf/"${SPECIES}"
\ No newline at end of file
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