Commit 71de7e58 authored by peguerin's avatar peguerin
Browse files

ddocent sh

parent 31a7e9a1
## species to process
SPECIES=$1
SPECIES=mullus
## dDocent
CONTAINER=/entrepot/working/seaconnect/seaConnect--dDocent/seaconnect.simg
DDOCENT_CONFIG=/entrepot/working/seaconnect/seaConnect--dDocent/01-infos/ddocent_config.file
#### run the workflow "dDocent"
cd 04-ddocent/"${SPECIES}"/
singularity exec -B "/entrepot:/entrepot" $CONTAINER dDocent $DDOCENT_CONFIG
cd ../../
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