ddocent sh

00-scripts/ddocent.sh

+## species to process
+
+SPECIES=$1
+SPECIES=mullus
+
+
+## dDocent
+CONTAINER=/entrepot/working/seaconnect/seaConnect--dDocent/seaconnect.simg
+DDOCENT_CONFIG=/entrepot/working/seaconnect/seaConnect--dDocent/01-infos/ddocent_config.file
+
+
+#### run the workflow "dDocent"
+cd 04-ddocent/"${SPECIES}"/
+singularity exec -B "/entrepot:/entrepot" $CONTAINER dDocent $DDOCENT_CONFIG
+cd ../../