Commit 18cdc4c4 authored by vmarques's avatar vmarques
Browse files

change minimum length sequence- from 32 (implicit) to 20 for lamproie

parent f475f73d

scripts/filter_and_demultiplex.sh

100644 → 100755
+1 −0
Original line number Diff line number Diff line
@@ -90,6 +90,7 @@ awk '{ print $2"\t"$3}' ${TAGS} | while read TAG_NAME TAG_SEQ ; do 
    #### Dereplicate at the study level

    vsearch \

        --quiet \

        --minseqlength $MIN_LENGTH \

        --derep_fulllength "${TMP_FASTA}" \

        --sizeout \

        --fasta_width 0 \