Commit 7c935b45 authored by peguerin's avatar peguerin
Browse files

fas_to_obiFASTA

parent 5eb3514a

main.sh

+1 −1
Original line number Diff line number Diff line
@@ -33,7 +33,7 @@ parallel < fq_dat_cmd.sh 
###############################################################################

## concatenate all the sample fas into a one OBI-fasta file

ALL_FAS="main/all.fasta"

python2 scripts/fas_to_obista.py -o $ALL_FAS

python2 scripts/fas_to_obifasta.py -o $ALL_FAS

## ###dereplicate reads into uniq sequences

dereplicated_all="${ALL_FAS/.fasta/.uniq.fasta}"

obiuniq -m sample $ALL_FAS > $dereplicated_all