Commit 7c935b45 authored by peguerin's avatar peguerin

fas_to_obiFASTA

parent 5eb3514a
......@@ -33,7 +33,7 @@ parallel < fq_dat_cmd.sh
###############################################################################
## concatenate all the sample fas into a one OBI-fasta file
ALL_FAS="main/all.fasta"
python2 scripts/fas_to_obista.py -o $ALL_FAS
python2 scripts/fas_to_obifasta.py -o $ALL_FAS
## ###dereplicate reads into uniq sequences
dereplicated_all="${ALL_FAS/.fasta/.uniq.fasta}"
obiuniq -m sample $ALL_FAS > $dereplicated_all
......
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