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The **curegen** module produces the curation CSV file taking advantage of geonames and ete3 dependencies. This curation CSV file can be use to perform automatic curation with the command `mkbdr validate --curate`.
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The **curegen** module produces the curation CSV file taking advantage of geonames and ete3 dependencies. This curation CSV file can be use to perform automatic curation with the command `mkbdr validate --curate` (see [Validate Section](https://gitlab.mbb.univ-montp2.fr/edna/custom_reference_database/-/wikis/Validate) for details).
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# Inputs
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# Inputs
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| ... | @@ -78,7 +78,7 @@ Let's see an example of result returned by curegen: |
... | @@ -78,7 +78,7 @@ Let's see an example of result returned by curegen: |
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The curation CSV file can be used with `mkbdr validate --curate` command to perform curation on faulty taxonomy records.
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The curation CSV file can be used with `mkbdr validate --curate` command to perform curation on faulty taxonomy records. (see [Validate Section](https://gitlab.mbb.univ-montp2.fr/edna/custom_reference_database/-/wikis/Validate) for details)
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:warning: This file is a raw product and need to be manually checked before to be used as input of `mkbdr validate --curate` to perform curation of species name and local taxonomy.
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:warning: This file is a raw product and need to be manually checked before to be used as input of `mkbdr validate --curate` to perform curation of species name and local taxonomy.
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| ... | | ... | |
