... | @@ -27,7 +27,7 @@ Download example data with: |
... | @@ -27,7 +27,7 @@ Download example data with: |
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curl -LJO https://gitlab.mbb.univ-montp2.fr/edna/custom_reference_database/-/raw/master/tests/data/raw.fasta
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curl -LJO https://gitlab.mbb.univ-montp2.fr/edna/custom_reference_database/-/raw/master/tests/data/raw.fasta
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```
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```
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* `raw.fasta`: a FASTA file of 4 records representative sequence of 4 taxon groups. More detail about the input [here](https://gitlab.mbb.univ-montp2.fr/edna/custom_reference_database/-/wikis/Files-definition#representative-sequences).
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* `raw.fasta`: a FASTA file of 4 records representative sequence of 4 taxon groups. More details about input files [here](https://gitlab.mbb.univ-montp2.fr/edna/custom_reference_database/-/wikis/Files-definition#representative-sequences).
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If you have installed MKBDR, you can run the example data with:
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If you have installed MKBDR, you can run the example data with:
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... | @@ -51,11 +51,11 @@ On these records, 2 are valid, 0 are faulty format and 2 are faulty taxon. |
... | @@ -51,11 +51,11 @@ On these records, 2 are valid, 0 are faulty format and 2 are faulty taxon. |
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* `res_raw_faulty_taxon.fasta`: a FASTA file with faulty taxonomy records (2 faulty records in this example)
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* `res_raw_faulty_taxon.fasta`: a FASTA file with faulty taxonomy records (2 faulty records in this example)
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* `res_raw_valide.fasta`: a FASTA file with correct records that can be use as reference database for taxonomic assignment (2 valid records in this example)
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* `res_raw_valide.fasta`: a FASTA file with correct records that can be use as reference database for taxonomic assignment (2 valid records in this example)
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Read more details about output files [here](https://gitlab.mbb.univ-montp2.fr/edna/custom_reference_database/-/wikis/Files-definition#output-files)
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Read more details about output files [here](https://gitlab.mbb.univ-montp2.fr/edna/custom_reference_database/-/wikis/Files-definition#output-files).
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# Next steps
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# Next steps
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Now that you've gotten the example to work, use the menu in the upper right to navigate to the more detailed descriptions and instructions for exploring your own data.
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Now that you've gotten the example to work, use the menu in the upper right to navigate to the more detailed descriptions and instructions for exploring your own data. You can try [Running MKBDR](https://gitlab.mbb.univ-montp2.fr/edna/custom_reference_database/-/wikis/Running-MKBDR) section to pursue.
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