format snakemake

8593bfc4 · peguerin · 036f2fcf · 8593bfc4
Commit 8593bfc4 authored Sep 25, 2019 by peguerin
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rules/step1.smk rules/step1.smk +1 -1

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--- a/rules/step1.smk
+++ b/rules/step1.smk
@@ -14,7 +14,7 @@ rule illuminapairedend:
    log:
        'log/illuminapairedend/{run}.log'
    params:
-        folderFastq=config['fastqFolderPath']
+        folderFastq=config['fastqFolderPath'],
        s_min=config["illuminapairedend"]["s_min"]
    shell:
        '''illuminapairedend -r {params.folderFastq}{input.R2} {params.folderFastq}{input.R1} --score-min={params.s_min} > {output.fq} 2> {log}'''