Commit 8593bfc4 authored by peguerin's avatar peguerin
Browse files

format snakemake

parent 036f2fcf

rules/step1.smk

+1 −1
Original line number Diff line number Diff line
@@ -14,7 +14,7 @@ rule illuminapairedend: 
    log:

        'log/illuminapairedend/{run}.log'

    params:

        folderFastq=config['fastqFolderPath']

        folderFastq=config['fastqFolderPath'],

        s_min=config["illuminapairedend"]["s_min"]

    shell:

        '''illuminapairedend -r {params.folderFastq}{input.R2} {params.folderFastq}{input.R1} --score-min={params.s_min} > {output.fq} 2> {log}'''