fastq run forrmr config file

Snakefile

@@ -6,15 +6,15 @@ configfile: "config.yaml"
 
 rule all:
     input:
-        expand("{folder}/{fastqf}_R1.fastq.gz", fastqf=config["fastqFiles"],folder=config["fastqFolderPath"]),        
-        expand('assembled/{run}/{run}.fastq', run=RUNS),
-        expand('assembled/{run}/{run}.ali.fastq', run=RUNS),
-        expand('assembled/{run}/{run}.ali.assigned.fastq', run=RUNS),
-        expand('assembled/{run}/{run}.unidentified.fastq', run=RUNS),
-        expand('log/remove_unaligned/{run}.log',run=RUNS),
-        expand('log/illuminapairedend/{run}.log',run=RUNS),
-        expand('log/assign_sequences/{run}.log',run=RUNS),
-        expand('log/split_sequences/{run}.log',run=RUNS)
+        expand("{folder}/{run}_R1.fastq.gz", run=config["fastqFiles"],folder=config["fastqFolderPath"]),        
+        expand('assembled/{run}/{run}.fastq', run=config["fastqFiles"]),
+        expand('assembled/{run}/{run}.ali.fastq', run=config["fastqFiles"]),
+        expand('assembled/{run}/{run}.ali.assigned.fastq', run=config["fastqFiles"]),
+        expand('assembled/{run}/{run}.unidentified.fastq', run=config["fastqFiles"]),
+        expand('log/remove_unaligned/{run}.log',run=config["fastqFiles"]),
+        expand('log/illuminapairedend/{run}.log',run=config["fastqFiles"]),
+        expand('log/assign_sequences/{run}.log',run=config["fastqFiles"]),
+        expand('log/split_sequences/{run}.log',run=config["fastqFiles"])
 
 
 include: "rules/step1.smk"
\ No newline at end of file