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Here we take advantage of snakemake to set a framework which automates metabarcoding analysis using [obitools](https://pythonhosted.org/OBITools/welcome.html). This framework manages dependencies so you don't need to install obitools because the framework will do this work for you. It is also easy to set parameters with a config files, so you can run many times the same analysis with different parameters.
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Here we take advantage of snakemake to set a framework which automates metabarcoding analysis using [obitools](https://pythonhosted.org/OBITools/welcome.html). This framework manages dependencies so you don't need to install obitools because the framework will do this work for you. It is also easy to set parameters with a config files, so you can run many times the same analysis with different parameters.
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